Variant report

Variant	rs6485615
Chromosome Location	chr11:45337653-45337654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45335928..45338773-chr11:45344348..45346925,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10742748	0.86[EUR][1000 genomes]
rs10742749	0.86[EUR][1000 genomes]
rs10769138	0.86[EUR][1000 genomes]
rs10838444	0.90[ASN][1000 genomes]
rs10838446	0.86[EUR][1000 genomes]
rs11038390	0.81[ASN][1000 genomes]
rs11530155	0.82[ASN][1000 genomes]
rs34801223	0.82[ASN][1000 genomes]
rs4755314	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4755962	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4755965	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4755966	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4755967	0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4755969	0.89[EUR][1000 genomes]
rs4755970	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6416133	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485613	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485614	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485616	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485619	0.87[EUR][1000 genomes]
rs6485620	0.81[AFR][1000 genomes]
rs7106802	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7110287	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7112192	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7118844	0.82[ASN][1000 genomes]
rs7122933	0.81[ASN][1000 genomes]
rs7123438	0.82[ASN][1000 genomes]
rs7124597	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7130748	0.82[ASN][1000 genomes]
rs7131174	0.82[ASN][1000 genomes]
rs7131438	0.80[ASN][1000 genomes]
rs7478974	0.86[EUR][1000 genomes]
rs7479052	0.86[EUR][1000 genomes]
rs7480175	0.82[ASN][1000 genomes]
rs7480542	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7483595	0.86[ASN][1000 genomes]
rs7946683	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9667484	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45326400-45344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links