Variant report

Variant	rs4755970
Chromosome Location	chr11:45350127-45350128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM11-8	chr11:45349524-45350967	ucscGeneNc_uc001myr_1

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10742748	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742749	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769138	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838446	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038390	0.81[EUR][1000 genomes]
rs11530155	0.81[EUR][1000 genomes]
rs34801223	0.82[EUR][1000 genomes]
rs4755314	0.85[EUR][1000 genomes]
rs4755962	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4755965	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4755966	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4755967	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4755969	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755975	0.82[EUR][1000 genomes]
rs6416133	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6485613	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6485614	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6485615	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6485616	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6485619	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6485620	0.86[EUR][1000 genomes]
rs7106802	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110287	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7112192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112723	0.86[EUR][1000 genomes]
rs7124597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7478974	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479052	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7480542	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7925771	0.82[EUR][1000 genomes]
rs7946683	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9667484	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv975839	chr11:45346121-45350850	Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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