Variant report

Variant	rs34801223
Chromosome Location	chr11:45336494-45336495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45335928..45338773-chr11:45344348..45346925,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10838444	0.88[ASN][1000 genomes]
rs11038388	0.88[ASN][1000 genomes]
rs11038390	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11530155	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791607	0.92[ASN][1000 genomes]
rs2863181	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4073405	0.97[ASN][1000 genomes]
rs4755962	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4755965	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4755966	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4755967	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4755969	0.81[EUR][1000 genomes]
rs4755970	0.82[EUR][1000 genomes]
rs4755975	0.86[EUR][1000 genomes]
rs6416133	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6485613	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6485614	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6485615	0.82[ASN][1000 genomes]
rs6485616	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6485620	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7106802	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7110287	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7112192	0.82[EUR][1000 genomes]
rs7112723	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7112865	0.97[ASN][1000 genomes]
rs7118844	0.94[ASN][1000 genomes]
rs7122933	0.94[ASN][1000 genomes]
rs7123438	0.94[ASN][1000 genomes]
rs7124597	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7130748	0.94[ASN][1000 genomes]
rs7131174	0.94[ASN][1000 genomes]
rs7131438	0.96[ASN][1000 genomes]
rs7480175	0.94[ASN][1000 genomes]
rs7480542	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7483595	0.89[ASN][1000 genomes]
rs7925771	0.86[EUR][1000 genomes]
rs7946683	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9667484	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45326400-45344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links