Variant report

Variant	rs12791607
Chromosome Location	chr11:45320411-45320412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1075778	0.83[EUR][1000 genomes]
rs10769133	0.82[EUR][1000 genomes]
rs10769134	0.82[EUR][1000 genomes]
rs10769135	0.83[EUR][1000 genomes]
rs1077490	0.84[EUR][1000 genomes]
rs1077491	0.84[EUR][1000 genomes]
rs10838437	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10838444	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11038382	0.85[EUR][1000 genomes]
rs11038384	0.85[EUR][1000 genomes]
rs11038388	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038390	0.93[ASN][1000 genomes]
rs11530155	0.92[ASN][1000 genomes]
rs11604409	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12363398	0.84[EUR][1000 genomes]
rs12363412	0.84[EUR][1000 genomes]
rs34191816	0.85[EUR][1000 genomes]
rs34801223	0.92[ASN][1000 genomes]
rs4073405	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4755965	0.81[ASN][1000 genomes]
rs4992029	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6485613	0.82[ASN][1000 genomes]
rs6485614	0.81[ASN][1000 genomes]
rs7112865	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114339	0.81[EUR][1000 genomes]
rs7118844	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7122933	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7123438	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7123765	0.82[EUR][1000 genomes]
rs7130748	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7131174	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7131438	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7395289	0.86[EUR][1000 genomes]
rs7480175	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7483595	0.85[ASN][1000 genomes]
rs7943596	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45320200-45320600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:45320200-45320600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:45320200-45320600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:45320200-45320800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:45320200-45320800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:45320200-45320800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:45320400-45320800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:45320400-45320800	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:45320400-45321000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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