Variant report

Variant	rs7114339
Chromosome Location	chr11:45286477-45286478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45167741..45169495-chr11:45284745..45287574,2	MCF-7	breast:
2	chr11:45284512..45286727-chr11:45305092..45307914,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction
ENSG00000019505	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1075778	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769133	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769134	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769135	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769136	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1077490	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1077491	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838437	0.91[ASN][1000 genomes]
rs10838438	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038372	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038382	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038384	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038388	0.81[EUR][1000 genomes]
rs11604409	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363398	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12363412	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12791607	0.81[EUR][1000 genomes]
rs2289448	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2863176	0.86[ASN][1000 genomes]
rs2863178	0.88[ASN][1000 genomes]
rs2863181	0.92[ASN][1000 genomes]
rs2863182	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2902429	0.89[ASN][1000 genomes]
rs2902433	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34191816	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4556529	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4556531	0.87[ASN][1000 genomes]
rs4755306	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4755943	0.85[ASN][1000 genomes]
rs4992029	0.91[ASN][1000 genomes]
rs6485603	0.86[ASN][1000 genomes]
rs6485605	0.91[ASN][1000 genomes]
rs6485607	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485608	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485609	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110580	0.87[ASN][1000 genomes]
rs7112865	0.80[EUR][1000 genomes]
rs7117240	0.90[ASN][1000 genomes]
rs7123698	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123765	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7127746	0.86[ASN][1000 genomes]
rs7131438	0.80[EUR][1000 genomes]
rs7395289	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7395357	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7395419	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7395421	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7396488	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs751196	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943596	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8929	0.87[ASN][1000 genomes]
rs9300051	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7114339	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45282200-45286800	Weak transcription	Pancreas	Pancrea
2	chr11:45282600-45286800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:45282600-45286800	Weak transcription	Fetal Brain Female	brain
4	chr11:45282600-45288800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:45283400-45288800	Enhancers	Fetal Intestine Small	intestine
6	chr11:45284200-45287600	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:45284400-45290200	Enhancers	Fetal Intestine Large	intestine
8	chr11:45284800-45286600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:45285400-45288600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr11:45285400-45289000	Enhancers	Stomach Mucosa	stomach
11	chr11:45285600-45287800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:45285800-45287400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:45285800-45287400	Enhancers	Small Intestine	intestine
14	chr11:45285800-45287800	Enhancers	HMEC	breast
15	chr11:45285800-45288200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:45286000-45286800	Enhancers	HSMMtube	muscle
17	chr11:45286000-45287000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr11:45286000-45287200	Enhancers	Colonic Mucosa	Colon
19	chr11:45286000-45287200	Enhancers	Hela-S3	cervix
20	chr11:45286000-45287200	Enhancers	NHDF-Ad	bronchial
21	chr11:45286000-45287600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr11:45286000-45288200	Enhancers	Osteobl	bone
23	chr11:45286200-45286600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:45286200-45286600	Enhancers	HSMM	muscle
25	chr11:45286200-45287000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:45286200-45287000	Flanking Active TSS	NH-A	brain
27	chr11:45286200-45287000	Enhancers	NHEK	skin
28	chr11:45286200-45287200	Enhancers	HUVEC	blood vessel
29	chr11:45286200-45287400	Flanking Active TSS	A549	lung
30	chr11:45286400-45286600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:45286400-45286600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:45286400-45286600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:45286400-45286800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:45286400-45287600	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr11:45286400-45287800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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