Variant report

Variant	rs2863176
Chromosome Location	chr11:45266939-45266940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1075778	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs10769133	0.85[ASN][1000 genomes]
rs10769134	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs10769135	0.81[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs10769136	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs1077490	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1077491	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10838437	0.94[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs10838438	0.88[ASN][1000 genomes]
rs11038354	0.93[JPT][hapmap]
rs11038358	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs11038360	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11038363	0.83[ASN][1000 genomes]
rs11038372	0.90[ASN][1000 genomes]
rs11038382	0.81[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038384	0.81[ASN][1000 genomes]
rs11604409	0.86[ASN][1000 genomes]
rs12363398	0.81[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs12363412	0.82[ASN][1000 genomes]
rs2289448	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2863178	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs2863181	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2863182	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2902429	0.93[ASN][1000 genomes]
rs34191816	0.81[ASN][1000 genomes]
rs3758719	0.81[ASN][1000 genomes]
rs3758726	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4556529	0.80[JPT][hapmap]
rs4556531	0.92[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755306	0.87[JPT][hapmap]
rs4755943	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4755945	0.89[ASN][1000 genomes]
rs4992029	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs6485603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485605	0.95[ASN][1000 genomes]
rs6485607	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6485608	0.87[JPT][hapmap]
rs7110580	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7114339	0.86[ASN][1000 genomes]
rs7117240	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7119605	0.93[JPT][hapmap]
rs7123698	0.84[ASN][1000 genomes]
rs7123765	0.84[ASN][1000 genomes]
rs7127746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs731102	0.93[JPT][hapmap]
rs7395289	0.81[ASN][1000 genomes]
rs7395357	0.87[JPT][hapmap]
rs7395419	0.86[JPT][hapmap]
rs7395421	0.86[JPT][hapmap]
rs7396488	0.87[JPT][hapmap]
rs751196	0.88[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7943596	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs8929	0.92[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9300051	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
3	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
5	chr11:45261200-45268800	Weak transcription	Fetal Stomach	stomach
6	chr11:45262000-45271400	Weak transcription	Brain Substantia Nigra	brain
7	chr11:45263400-45267200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:45264200-45268000	Strong transcription	Fetal Brain Female	brain
9	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:45265000-45267800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:45265400-45268200	Strong transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:45265400-45270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:45265600-45276400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:45265800-45267800	Genic enhancers	Fetal Intestine Small	intestine
16	chr11:45266000-45267600	Enhancers	Fetal Intestine Large	intestine
17	chr11:45266000-45271600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:45266200-45267000	Weak transcription	Brain Germinal Matrix	brain
19	chr11:45266600-45267600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:45266600-45267600	Enhancers	Duodenum Mucosa	Duodenum
21	chr11:45266600-45267600	Enhancers	Right Atrium	heart
22	chr11:45266600-45267600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:45266600-45268000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr11:45266600-45268200	Enhancers	Left Ventricle	heart
25	chr11:45266800-45267600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr11:45266800-45267600	Enhancers	Fetal Heart	heart

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