Variant report

Variant	rs3758726
Chromosome Location	chr11:45241581-45241582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1075778	0.80[JPT][hapmap]
rs10769130	0.81[ASN][1000 genomes]
rs10769134	0.80[JPT][hapmap]
rs10769135	0.80[JPT][hapmap]
rs1077490	0.80[JPT][hapmap]
rs1077491	0.80[JPT][hapmap]
rs10838437	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs11038354	0.96[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038358	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038360	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038363	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038382	0.80[JPT][hapmap]
rs11828734	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12226640	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12363398	0.80[JPT][hapmap]
rs2863176	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2863178	0.86[JPT][hapmap]
rs2863181	0.80[JPT][hapmap]
rs2863182	0.80[JPT][hapmap]
rs2902429	0.82[ASN][1000 genomes]
rs3740781	0.82[ASN][1000 genomes]
rs3758719	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758725	0.81[ASN][1000 genomes]
rs3758727	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758729	0.81[CHD][hapmap];0.83[GIH][hapmap]
rs3781705	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4556531	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4755306	0.80[JPT][hapmap]
rs4755943	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs4755945	0.89[ASN][1000 genomes]
rs4992029	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs56408918	0.81[ASN][1000 genomes]
rs6485603	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs6485605	0.80[ASN][1000 genomes]
rs6485608	0.80[JPT][hapmap]
rs7110580	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7117240	0.86[JPT][hapmap]
rs7119605	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7127746	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs714417	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs731102	0.96[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7395357	0.80[JPT][hapmap]
rs7396488	0.80[JPT][hapmap]
rs751196	0.86[JPT][hapmap]
rs7943596	0.80[JPT][hapmap]
rs8929	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9300051	0.86[JPT][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs3758726	SYT13	cis	Thyroid	GTEx
rs3758726	RP11-430H10.1	cis	Artery Tibial	GTEx
rs3758726	OR4X2	cis	parietal	SCAN
rs3758726	PRDM11	cis	Thyroid	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:45206600-45251600	Weak transcription	HepG2	liver
4	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:45227400-45241600	Weak transcription	Primary B cells from cord blood	blood
8	chr11:45227400-45242600	Weak transcription	Liver	Liver
9	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:45229000-45246600	Weak transcription	Primary T cells from cord blood	blood
11	chr11:45231400-45242400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:45232000-45247600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:45232200-45247600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:45232200-45247800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:45232400-45241800	Weak transcription	Fetal Kidney	kidney
16	chr11:45232400-45247000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:45232400-45247600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:45232400-45247800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:45232400-45247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:45232400-45247800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:45232400-45250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:45232600-45245200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:45232600-45247000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:45232800-45246000	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:45232800-45247200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:45232800-45248000	Weak transcription	Fetal Brain Male	brain
28	chr11:45233000-45245000	Weak transcription	Hela-S3	cervix
29	chr11:45233000-45245400	Weak transcription	Brain Substantia Nigra	brain
30	chr11:45233600-45248800	Weak transcription	Fetal Heart	heart
31	chr11:45233800-45246400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:45234600-45242400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:45234800-45247000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:45235000-45245000	Weak transcription	Brain Angular Gyrus	brain
35	chr11:45235000-45247200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr11:45235000-45247200	Weak transcription	Placenta	Placenta
37	chr11:45235200-45242200	Weak transcription	Fetal Brain Female	brain
38	chr11:45235200-45242600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:45235200-45245600	Weak transcription	Gastric	stomach
40	chr11:45235200-45246000	Weak transcription	A549	lung
41	chr11:45235200-45246400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:45235200-45247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:45235200-45247600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:45235200-45247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:45235200-45247800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:45235400-45246000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:45235400-45246000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:45235400-45247600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:45235600-45241800	Weak transcription	Brain Hippocampus Middle	brain
50	chr11:45235600-45245200	Weak transcription	Esophagus	oesophagus

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