Variant report

Variant	rs3781705
Chromosome Location	chr11:45230862-45230863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45230472..45232780-chr11:45243145..45245463,2	K562	blood:
2	chr11:45167215..45168888-chr11:45229498..45231203,2	MCF-7	breast:
3	chr11:45225656..45227629-chr11:45228825..45231066,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11038354	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11038358	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11038360	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11038363	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11828734	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12226640	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758719	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758726	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758727	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755945	0.83[ASN][1000 genomes]
rs7119605	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs731102	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3781705	PRDM11	cis	Thyroid	GTEx
rs3781705	RP11-430H10.1	cis	Artery Tibial	GTEx
rs3781705	SYT13	cis	Thyroid	GTEx

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45202800-45234000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:45203000-45237000	Weak transcription	Small Intestine	intestine
3	chr11:45203400-45231000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:45203600-45231000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:45205800-45238800	Weak transcription	HSMMtube	muscle
6	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:45206600-45251600	Weak transcription	HepG2	liver
9	chr11:45207000-45232400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:45209000-45235200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:45210000-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:45210400-45231200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:45210400-45232000	Weak transcription	Hela-S3	cervix
16	chr11:45211800-45231000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:45214400-45234800	Weak transcription	A549	lung
18	chr11:45214600-45231000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:45215800-45231000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:45221200-45231400	Weak transcription	Thymus	Thymus
21	chr11:45224600-45231000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:45225800-45231200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:45226000-45231000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:45226400-45234200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:45226600-45231000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:45227000-45231200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:45227000-45234000	Enhancers	Right Atrium	heart
29	chr11:45227400-45231000	Weak transcription	Brain Germinal Matrix	brain
30	chr11:45227400-45241600	Weak transcription	Primary B cells from cord blood	blood
31	chr11:45227400-45242600	Weak transcription	Liver	Liver
32	chr11:45227600-45233400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:45228000-45231000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:45228200-45231600	Enhancers	Right Ventricle	heart
36	chr11:45228600-45231000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:45228600-45233200	Enhancers	Left Ventricle	heart
38	chr11:45229000-45231800	Genic enhancers	Fetal Stomach	stomach
39	chr11:45229000-45246600	Weak transcription	Primary T cells from cord blood	blood
40	chr11:45229200-45231800	Enhancers	Lung	lung
41	chr11:45229200-45237400	Genic enhancers	Fetal Muscle Leg	muscle
42	chr11:45229400-45231600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:45229400-45232200	Enhancers	Stomach Mucosa	stomach
44	chr11:45229400-45232400	Enhancers	Placenta Amnion	Placenta Amnion
45	chr11:45229600-45231200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:45229600-45232600	Genic enhancers	Fetal Intestine Large	intestine
47	chr11:45229600-45232600	Genic enhancers	Fetal Intestine Small	intestine
48	chr11:45229600-45233000	Enhancers	Fetal Heart	heart
49	chr11:45229800-45231200	Enhancers	Fetal Brain Female	brain
50	chr11:45229800-45231400	Strong transcription	Primary T helper cells fromperipheralblood	blood

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