The 2.0 version of rSNPBase

Variant report

Variant rs12226640
Chromosome Location chr11:45230443-45230444
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45202800-45234000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr11:45203000-45237000 Weak transcription Small Intestine intestine
3 chr11:45203400-45231000 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr11:45203600-45231000 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr11:45205800-45238800 Weak transcription HSMMtube muscle
6 chr11:45205800-45251800 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr11:45206000-45247800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr11:45206600-45251600 Weak transcription HepG2 liver
9 chr11:45207000-45232400 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr11:45209000-45235200 Weak transcription Primary T cells fromperipheralblood blood
11 chr11:45210000-45234200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr11:45210200-45247600 Weak transcription H9 Cell Line embryonic stem cell
13 chr11:45210200-45251600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr11:45210400-45230600 Weak transcription Fetal Brain Male brain
15 chr11:45210400-45230800 Weak transcription Brain Substantia Nigra brain
16 chr11:45210400-45230800 Weak transcription Rectal Smooth Muscle rectum
17 chr11:45210400-45231200 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr11:45210400-45232000 Weak transcription Hela-S3 cervix
19 chr11:45211800-45231000 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr11:45214400-45234800 Weak transcription A549 lung
21 chr11:45214600-45231000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr11:45215800-45231000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr11:45221200-45230600 Weak transcription Primary hematopoietic stem cells blood
24 chr11:45221200-45231400 Weak transcription Thymus Thymus
25 chr11:45223400-45230800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr11:45224600-45231000 Strong transcription Primary hematopoietic stem cells short term culture blood
27 chr11:45224800-45247800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr11:45225800-45231200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr11:45226000-45231000 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr11:45226400-45234200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr11:45226600-45231000 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr11:45227000-45231200 Weak transcription Duodenum Mucosa Duodenum
33 chr11:45227000-45234000 Enhancers Right Atrium heart
34 chr11:45227200-45230600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr11:45227400-45230600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr11:45227400-45231000 Weak transcription Brain Germinal Matrix brain
37 chr11:45227400-45241600 Weak transcription Primary B cells from cord blood blood
38 chr11:45227400-45242600 Weak transcription Liver Liver
39 chr11:45227600-45233400 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr11:45227800-45247400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr11:45228000-45230800 Weak transcription Cortex derived primary cultured neurospheres brain
42 chr11:45228000-45230800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr11:45228000-45231000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr11:45228200-45231600 Enhancers Right Ventricle heart
45 chr11:45228600-45231000 Weak transcription Primary B cells from peripheral blood blood
46 chr11:45228600-45233200 Enhancers Left Ventricle heart
47 chr11:45228800-45230600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr11:45229000-45231800 Genic enhancers Fetal Stomach stomach
49 chr11:45229000-45246600 Weak transcription Primary T cells from cord blood blood
50 chr11:45229200-45231800 Enhancers Lung lung

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Last update: Aug 31, 2015