Variant report

Variant	rs11038363
Chromosome Location	chr11:45252267-45252268
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45245651..45250256-chr11:45251414..45255574,6	K562	blood:
2	chr11:45247268..45250256-chr11:45252250..45254749,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10769130	0.81[ASN][1000 genomes]
rs10838437	0.81[ASN][1000 genomes]
rs11038354	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038358	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828734	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12226640	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2863176	0.83[ASN][1000 genomes]
rs2863178	0.80[ASN][1000 genomes]
rs2902429	0.83[ASN][1000 genomes]
rs3740781	0.82[ASN][1000 genomes]
rs3758719	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758725	0.80[ASN][1000 genomes]
rs3758726	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758727	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3781705	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4556531	0.84[ASN][1000 genomes]
rs4755943	0.86[ASN][1000 genomes]
rs4755945	0.90[ASN][1000 genomes]
rs4992029	0.81[ASN][1000 genomes]
rs56408918	0.81[ASN][1000 genomes]
rs6485603	0.85[ASN][1000 genomes]
rs6485605	0.81[ASN][1000 genomes]
rs7110580	0.84[ASN][1000 genomes]
rs7117240	0.80[ASN][1000 genomes]
rs7119605	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127746	0.85[ASN][1000 genomes]
rs714417	0.81[ASN][1000 genomes]
rs731102	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8929	0.84[ASN][1000 genomes]
rs9300051	0.83[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11038363	RP11-430H10.1	cis	Artery Tibial	GTEx
rs11038363	PRDM11	cis	Thyroid	GTEx
rs11038363	SYT13	cis	Thyroid	GTEx

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:45235600-45255000	Strong transcription	Fetal Stomach	stomach
3	chr11:45237200-45252400	Weak transcription	Psoas Muscle	Psoas
4	chr11:45239400-45257200	Weak transcription	Right Atrium	heart
5	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:45241000-45252400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr11:45245200-45255200	Weak transcription	Hela-S3	cervix
8	chr11:45246000-45254800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:45247800-45255000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:45248200-45254800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:45248200-45255200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:45248400-45254800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:45248600-45252400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:45248800-45254800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:45248800-45254800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:45249000-45252600	Strong transcription	Fetal Intestine Large	intestine
18	chr11:45249000-45254000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:45249000-45254800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:45249000-45255000	Weak transcription	Pancreas	Pancrea
21	chr11:45249200-45255000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:45249200-45255000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:45249400-45252800	Weak transcription	Primary T cells from cord blood	blood
24	chr11:45249400-45253800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:45249400-45254200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:45249400-45255000	Weak transcription	Brain Anterior Caudate	brain
27	chr11:45249400-45255000	Weak transcription	Placenta	Placenta
28	chr11:45249400-45255200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:45249600-45252600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:45249600-45252800	Weak transcription	Adipose Nuclei	Adipose
31	chr11:45249600-45253000	Weak transcription	Fetal Kidney	kidney
32	chr11:45249600-45253800	Weak transcription	Fetal Brain Male	brain
33	chr11:45249600-45254800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:45249600-45254800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:45249600-45254800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:45249600-45255000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:45249600-45255000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:45249600-45255000	Weak transcription	Fetal Heart	heart
39	chr11:45249600-45255000	Weak transcription	Right Ventricle	heart
40	chr11:45249600-45257400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:45249600-45257600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:45249800-45253400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:45249800-45254000	Weak transcription	Fetal Brain Female	brain
44	chr11:45249800-45255000	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:45249800-45255000	Weak transcription	Ovary	ovary
46	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
47	chr11:45250000-45252800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:45250000-45257400	Weak transcription	Lung	lung
49	chr11:45250200-45252800	Weak transcription	Liver	Liver
50	chr11:45250200-45253200	Weak transcription	Duodenum Mucosa	Duodenum

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