Variant report

Variant	rs2863178
Chromosome Location	chr11:45272453-45272454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1075778	0.88[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs10769133	0.87[ASN][1000 genomes]
rs10769134	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769135	0.87[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs10769136	0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1077490	0.88[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs1077491	0.88[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10838437	0.86[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10838438	0.91[ASN][1000 genomes]
rs11038354	0.86[JPT][hapmap]
rs11038358	0.86[JPT][hapmap]
rs11038360	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11038363	0.80[ASN][1000 genomes]
rs11038372	0.93[ASN][1000 genomes]
rs11038382	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11038384	0.84[ASN][1000 genomes]
rs11604409	0.88[ASN][1000 genomes]
rs12363398	0.87[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs12363412	0.85[ASN][1000 genomes]
rs2289448	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2863176	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.92[ASN][1000 genomes]
rs2863181	0.88[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2863182	0.88[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2902429	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2902433	0.82[ASN][1000 genomes]
rs34191816	0.83[ASN][1000 genomes]
rs3758726	0.86[JPT][hapmap]
rs4556529	0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4556531	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs4755306	0.83[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4755943	0.88[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4755945	0.85[ASN][1000 genomes]
rs4992029	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6485603	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.94[ASN][1000 genomes]
rs6485605	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6485607	0.88[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs6485608	0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs6485609	0.82[ASN][1000 genomes]
rs7110580	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.93[ASN][1000 genomes]
rs7114339	0.88[ASN][1000 genomes]
rs7117240	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119605	0.85[JPT][hapmap]
rs7123698	0.87[ASN][1000 genomes]
rs7123765	0.87[ASN][1000 genomes]
rs7127746	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs731102	0.85[JPT][hapmap]
rs7395289	0.84[ASN][1000 genomes]
rs7395357	0.83[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7395419	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7395421	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7396488	0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs751196	0.94[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7943596	0.88[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs8929	0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.93[ASN][1000 genomes]
rs9300051	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2863178	SYT13	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
3	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
5	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:45265600-45276400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:45267600-45273200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:45267600-45273600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:45267600-45273800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:45267600-45274000	Weak transcription	Right Atrium	heart
12	chr11:45267800-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:45268200-45275200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:45270800-45273800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:45270800-45274200	Weak transcription	Colonic Mucosa	Colon
16	chr11:45271400-45272800	Enhancers	Fetal Stomach	stomach
17	chr11:45271400-45274000	Strong transcription	Fetal Intestine Small	intestine
18	chr11:45271600-45272600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr11:45271600-45272600	Enhancers	Fetal Lung	lung
20	chr11:45271600-45273200	Genic enhancers	Fetal Brain Female	brain
21	chr11:45271800-45272600	Enhancers	Fetal Kidney	kidney
22	chr11:45271800-45272800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr11:45272200-45272600	Enhancers	Fetal Muscle Leg	muscle
24	chr11:45272400-45272600	Enhancers	Right Ventricle	heart
25	chr11:45272400-45275600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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