Variant report

Variant	rs7117240
Chromosome Location	chr11:45269749-45269750
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1075778	0.82[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769133	0.89[ASN][1000 genomes]
rs10769134	0.82[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs10769135	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769136	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs1077490	0.82[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1077491	0.82[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10838437	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10838438	0.93[ASN][1000 genomes]
rs11038354	0.86[JPT][hapmap]
rs11038358	0.86[JPT][hapmap]
rs11038360	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11038363	0.80[ASN][1000 genomes]
rs11038372	0.94[ASN][1000 genomes]
rs11038382	0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs11038384	0.86[ASN][1000 genomes]
rs11604409	0.90[ASN][1000 genomes]
rs12363398	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs12363412	0.87[ASN][1000 genomes]
rs2289448	0.81[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2863176	1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2863178	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2863181	0.82[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2863182	0.82[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2902429	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2902433	0.84[ASN][1000 genomes]
rs34191816	0.85[ASN][1000 genomes]
rs3758726	0.86[JPT][hapmap]
rs4556529	0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs4556531	0.92[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.95[ASN][1000 genomes]
rs4755306	0.81[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4755943	0.94[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4755945	0.85[ASN][1000 genomes]
rs4992029	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6485603	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.94[ASN][1000 genomes]
rs6485605	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6485607	0.81[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6485608	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6485609	0.83[ASN][1000 genomes]
rs7110580	0.92[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.95[ASN][1000 genomes]
rs7114339	0.90[ASN][1000 genomes]
rs7119605	0.85[JPT][hapmap]
rs7123698	0.88[ASN][1000 genomes]
rs7123765	0.88[ASN][1000 genomes]
rs7127746	1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs731102	0.85[JPT][hapmap]
rs7395289	0.86[ASN][1000 genomes]
rs7395357	0.81[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7395419	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7395421	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7396488	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs751196	0.88[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7943596	0.82[CHB][hapmap];0.91[CHD][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs8929	0.92[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.95[ASN][1000 genomes]
rs9300051	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7117240	SYT13	cis	cerebellum	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
3	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
5	chr11:45262000-45271400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:45265400-45270000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:45265600-45276400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:45266000-45271600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:45267600-45271600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:45267600-45273200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:45267600-45273600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:45267600-45273800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:45267600-45274000	Weak transcription	Right Atrium	heart
16	chr11:45267800-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:45268000-45271600	Weak transcription	Fetal Brain Female	brain
18	chr11:45268200-45271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:45268200-45275200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:45269200-45271400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:45269200-45271400	Weak transcription	Fetal Stomach	stomach
22	chr11:45269200-45272200	Weak transcription	Fetal Muscle Leg	muscle

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