Variant report

Variant	rs9300051
Chromosome Location	chr11:45271699-45271700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr11:45271636-45272050	GM12878	blood:	n/a	n/a
2	SPI1	chr11:45271672-45271968	GM12878	blood:	n/a	n/a
3	SPI1	chr11:45271620-45271940	GM12891	blood:	n/a	n/a
4	SPI1	chr11:45271693-45271852	GM12878	blood:	n/a	n/a
5	PAX5	chr11:45271657-45271877	GM12878	blood:	n/a	n/a
6	SPI1	chr11:45271520-45272141	GM12878	blood:	n/a	n/a
7	SPI1	chr11:45271606-45271972	GM12891	blood:	n/a	n/a
8	BATF	chr11:45271645-45271863	GM12878	blood:	n/a	n/a
9	BCL11A	chr11:45271661-45271957	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000254497	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1075778	0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769133	0.88[ASN][1000 genomes]
rs10769134	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10769135	0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769136	0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs1077490	0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs1077491	0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs10838437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10838438	0.92[ASN][1000 genomes]
rs11038354	0.86[JPT][hapmap]
rs11038358	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11038360	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11038363	0.83[ASN][1000 genomes]
rs11038372	0.94[ASN][1000 genomes]
rs11038382	0.88[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11038384	0.85[ASN][1000 genomes]
rs11604409	0.89[ASN][1000 genomes]
rs12363398	0.88[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12363412	0.86[ASN][1000 genomes]
rs2289448	0.88[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2863176	0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2863178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2863181	0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2863182	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2902429	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902433	0.83[ASN][1000 genomes]
rs34191816	0.84[ASN][1000 genomes]
rs3758719	0.81[ASN][1000 genomes]
rs3758726	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4556529	0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs4556531	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4755306	0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4755943	0.88[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4755945	0.87[ASN][1000 genomes]
rs4992029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6485603	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6485605	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485607	0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6485608	0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs6485609	0.82[ASN][1000 genomes]
rs7110580	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs7114339	0.89[ASN][1000 genomes]
rs7117240	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7119605	0.86[JPT][hapmap]
rs7123698	0.89[ASN][1000 genomes]
rs7123765	0.89[ASN][1000 genomes]
rs7127746	0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs731102	0.85[JPT][hapmap]
rs7395289	0.85[ASN][1000 genomes]
rs7395357	0.83[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7395419	0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7395421	0.87[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7396488	0.83[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs751196	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7943596	0.88[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs8929	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
3	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
5	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:45265600-45276400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:45267600-45273200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:45267600-45273600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:45267600-45273800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:45267600-45274000	Weak transcription	Right Atrium	heart
12	chr11:45267800-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:45268200-45271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:45268200-45275200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:45269200-45272200	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:45270800-45273800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:45270800-45274200	Weak transcription	Colonic Mucosa	Colon
18	chr11:45271400-45272800	Enhancers	Fetal Stomach	stomach
19	chr11:45271400-45274000	Strong transcription	Fetal Intestine Small	intestine
20	chr11:45271600-45271800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:45271600-45271800	Genic enhancers	Rectal Mucosa Donor 29	rectum
22	chr11:45271600-45272200	Enhancers	GM12878-XiMat	blood
23	chr11:45271600-45272600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr11:45271600-45272600	Enhancers	Fetal Lung	lung
25	chr11:45271600-45273200	Genic enhancers	Fetal Brain Female	brain

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