Variant report

Variant	rs11038372
Chromosome Location	chr11:45282994-45282995
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1075778	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769133	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769134	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769135	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769136	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1077490	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1077491	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838437	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838438	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11038382	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11038384	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11604409	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12363398	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12363412	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289448	0.89[ASN][1000 genomes]
rs2863176	0.90[ASN][1000 genomes]
rs2863178	0.93[ASN][1000 genomes]
rs2863181	0.87[ASN][1000 genomes]
rs2863182	0.89[ASN][1000 genomes]
rs2902429	0.94[ASN][1000 genomes]
rs2902433	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34191816	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4556529	0.89[ASN][1000 genomes]
rs4556531	0.91[ASN][1000 genomes]
rs4755306	0.88[ASN][1000 genomes]
rs4755943	0.89[ASN][1000 genomes]
rs4755945	0.81[ASN][1000 genomes]
rs4992029	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485603	0.90[ASN][1000 genomes]
rs6485605	0.95[ASN][1000 genomes]
rs6485607	0.88[ASN][1000 genomes]
rs6485608	0.88[ASN][1000 genomes]
rs6485609	0.88[ASN][1000 genomes]
rs7110580	0.91[ASN][1000 genomes]
rs7114339	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7117240	0.94[ASN][1000 genomes]
rs7123698	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7123765	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127746	0.90[ASN][1000 genomes]
rs7395289	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7395357	0.88[ASN][1000 genomes]
rs7395419	0.88[ASN][1000 genomes]
rs7395421	0.88[ASN][1000 genomes]
rs7396488	0.88[ASN][1000 genomes]
rs751196	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7943596	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8929	0.91[ASN][1000 genomes]
rs9300051	0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11038372	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45280400-45283000	Enhancers	Fetal Intestine Small	intestine
2	chr11:45281400-45286000	Weak transcription	Colonic Mucosa	Colon
3	chr11:45281600-45284000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:45281600-45284400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:45281600-45284400	Weak transcription	HSMMtube	muscle
6	chr11:45281600-45284400	Weak transcription	Osteobl	bone
7	chr11:45281600-45285600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:45281600-45286200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:45281800-45283600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:45281800-45284800	Enhancers	Hela-S3	cervix
11	chr11:45281800-45285600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:45281800-45285800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:45281800-45285800	Weak transcription	HSMM	muscle
14	chr11:45281800-45286000	Weak transcription	NHDF-Ad	bronchial
15	chr11:45282000-45284400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:45282000-45285400	Weak transcription	Stomach Mucosa	stomach
17	chr11:45282200-45286000	Weak transcription	NH-A	brain
18	chr11:45282200-45286800	Weak transcription	Pancreas	Pancrea
19	chr11:45282400-45284200	Weak transcription	A549	lung
20	chr11:45282600-45284200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:45282600-45284400	Weak transcription	Fetal Intestine Large	intestine
22	chr11:45282600-45286000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:45282600-45286800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:45282600-45286800	Weak transcription	Fetal Brain Female	brain
25	chr11:45282600-45288800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:45282800-45284600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:45282800-45284800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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