Variant report

Variant	rs4755943
Chromosome Location	chr11:45258392-45258393
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45201511..45203799-chr11:45256779..45259525,2	MCF-7	breast:
2	chr11:45166841..45169214-chr11:45257399..45259813,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1075778	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10769133	0.84[ASN][1000 genomes]
rs10769134	0.88[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10769135	0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10769136	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs1077490	0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1077491	0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838437	0.88[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs10838438	0.87[ASN][1000 genomes]
rs11038354	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs11038358	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs11038360	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11038363	0.86[ASN][1000 genomes]
rs11038372	0.89[ASN][1000 genomes]
rs11038382	0.88[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038384	0.81[ASN][1000 genomes]
rs11604409	0.85[ASN][1000 genomes]
rs11828734	0.80[ASN][1000 genomes]
rs12226640	0.80[ASN][1000 genomes]
rs12363398	0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs12363412	0.81[ASN][1000 genomes]
rs2289448	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2863176	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2863178	0.88[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2863181	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2863182	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2902429	0.94[ASN][1000 genomes]
rs3758719	0.84[ASN][1000 genomes]
rs3758726	0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs3758727	0.80[ASN][1000 genomes]
rs4556529	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs4556531	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4755306	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs4755945	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4992029	0.87[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6485603	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6485605	0.94[ASN][1000 genomes]
rs6485607	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs6485608	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7110580	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7114339	0.85[ASN][1000 genomes]
rs7117240	0.94[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs7119605	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7123698	0.83[ASN][1000 genomes]
rs7123765	0.83[ASN][1000 genomes]
rs7127746	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs731102	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7395289	0.81[ASN][1000 genomes]
rs7395357	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs7395419	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7395421	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7396488	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs751196	0.82[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs7943596	0.88[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs8929	0.94[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9300051	0.88[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
4	chr11:45250800-45259200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:45252600-45264600	Weak transcription	Fetal Intestine Large	intestine
6	chr11:45254800-45259400	Weak transcription	Fetal Brain Female	brain
7	chr11:45255400-45258600	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:45255400-45259400	Weak transcription	Fetal Brain Male	brain
9	chr11:45255800-45258400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:45256200-45259000	Weak transcription	Fetal Stomach	stomach
12	chr11:45257000-45264600	Weak transcription	Fetal Intestine Small	intestine
13	chr11:45257800-45259200	Weak transcription	Brain Inferior Temporal Lobe	brain

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