Variant report

Variant	rs2863181
Chromosome Location	chr11:45295347-45295348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1075778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10769133	0.93[ASN][1000 genomes]
rs10769134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10769135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10769136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1077490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1077491	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10838437	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs10838438	0.85[ASN][1000 genomes]
rs11038354	0.80[JPT][hapmap]
rs11038358	0.80[JPT][hapmap]
rs11038360	0.87[JPT][hapmap]
rs11038372	0.87[ASN][1000 genomes]
rs11038382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11038384	0.93[ASN][1000 genomes]
rs11038390	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11530155	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11604409	0.92[ASN][1000 genomes]
rs12363398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12363412	0.94[ASN][1000 genomes]
rs2289448	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2863176	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2863178	0.88[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2863182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2902429	0.81[ASN][1000 genomes]
rs2902433	0.91[ASN][1000 genomes]
rs34191816	0.92[ASN][1000 genomes]
rs34801223	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3758726	0.80[JPT][hapmap]
rs4556529	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4556531	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs4755306	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4755943	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs4755965	0.85[EUR][1000 genomes]
rs4992029	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6485603	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs6485605	0.83[ASN][1000 genomes]
rs6485607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6485608	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6485609	0.90[ASN][1000 genomes]
rs6485620	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7110287	0.81[EUR][1000 genomes]
rs7110580	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs7112723	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7114339	0.92[ASN][1000 genomes]
rs7117240	0.82[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7119605	0.80[JPT][hapmap]
rs7123698	0.92[ASN][1000 genomes]
rs7123765	0.92[ASN][1000 genomes]
rs7127746	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs731102	0.85[JPT][hapmap]
rs7395289	0.93[ASN][1000 genomes]
rs7395357	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7395419	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7395421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7396488	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs751196	0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs7943596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8929	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs9300051	0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45294800-45295600	Enhancers	A549	lung
2	chr11:45294800-45295800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:45294800-45297400	Enhancers	Fetal Brain Male	brain
4	chr11:45294800-45297600	Enhancers	Fetal Brain Female	brain
5	chr11:45294800-45299000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:45295200-45296800	Weak transcription	HMEC	breast
7	chr11:45295200-45303600	Weak transcription	Fetal Intestine Small	intestine

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