Variant report

Variant	rs11038360
Chromosome Location	chr11:45247314-45247315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45245651..45250256-chr11:45251414..45255574,6	K562	blood:
2	chr11:45184640..45186467-chr11:45245800..45248700,2	MCF-7	breast:
3	chr11:45166955..45170393-chr11:45245882..45249087,3	K562	blood:
4	chr11:45167836..45170393-chr11:45247199..45249087,2	K562	blood:
5	chr11:45247268..45250256-chr11:45252250..45254749,3	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1075778	0.87[JPT][hapmap]
rs10769130	0.81[ASN][1000 genomes]
rs10769134	0.87[JPT][hapmap]
rs10769135	0.87[JPT][hapmap]
rs10769136	0.86[JPT][hapmap]
rs1077490	0.87[JPT][hapmap]
rs1077491	0.87[JPT][hapmap]
rs10838437	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs11038354	0.96[CEU][hapmap];0.87[CHB][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11038363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038382	0.87[JPT][hapmap]
rs11828734	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12226640	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12363398	0.87[JPT][hapmap]
rs2289448	0.87[JPT][hapmap]
rs2863176	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2863178	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs2863181	0.87[JPT][hapmap]
rs2863182	0.87[JPT][hapmap]
rs2902429	0.83[ASN][1000 genomes]
rs3740781	0.82[ASN][1000 genomes]
rs3758719	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758725	0.80[ASN][1000 genomes]
rs3758726	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758727	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758729	0.81[GIH][hapmap];0.86[MKK][hapmap]
rs3781705	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4556529	0.81[JPT][hapmap]
rs4556531	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4755306	0.87[JPT][hapmap]
rs4755943	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4755945	0.90[ASN][1000 genomes]
rs4992029	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs56408918	0.81[ASN][1000 genomes]
rs6485603	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6485605	0.81[ASN][1000 genomes]
rs6485607	0.87[JPT][hapmap]
rs6485608	0.87[JPT][hapmap]
rs7110580	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7117240	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7119605	0.92[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7127746	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs714417	0.87[CHB][hapmap];0.81[ASN][1000 genomes]
rs731102	0.96[CEU][hapmap];0.93[CHB][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7395357	0.87[JPT][hapmap]
rs7395419	0.87[JPT][hapmap]
rs7395421	0.86[JPT][hapmap]
rs7396488	0.87[JPT][hapmap]
rs751196	0.93[JPT][hapmap]
rs7943596	0.87[JPT][hapmap]
rs8929	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9300051	0.94[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11038360	PRDM11	cis	Thyroid	GTEx
rs11038360	RP11-430H10.1	cis	Artery Tibial	GTEx
rs11038360	SYT13	cis	Thyroid	GTEx

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45205800-45251800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr11:45206000-45247800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:45206600-45251600	Weak transcription	HepG2	liver
4	chr11:45210200-45247600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:45210200-45251600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:45224800-45247800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:45227800-45247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:45232000-45247600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:45232200-45247600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:45232200-45247800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:45232400-45247600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:45232400-45247800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:45232400-45247800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:45232400-45247800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:45232400-45250400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:45232600-45255200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:45232800-45248000	Weak transcription	Fetal Brain Male	brain
18	chr11:45233600-45248800	Weak transcription	Fetal Heart	heart
19	chr11:45235200-45247600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:45235200-45247600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:45235200-45247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:45235200-45247800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:45235400-45247600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:45235600-45247800	Weak transcription	Colonic Mucosa	Colon
25	chr11:45235600-45251800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:45235600-45255000	Strong transcription	Fetal Stomach	stomach
27	chr11:45235800-45247600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:45237200-45252400	Weak transcription	Psoas Muscle	Psoas
29	chr11:45237400-45247800	Weak transcription	Small Intestine	intestine
30	chr11:45239400-45257200	Weak transcription	Right Atrium	heart
31	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:45240400-45251600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:45240400-45252000	Strong transcription	Fetal Muscle Leg	muscle
34	chr11:45240800-45250600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:45240800-45250800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:45240800-45251400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:45241000-45248400	Strong transcription	Lung	lung
38	chr11:45241000-45249600	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr11:45241000-45249800	Strong transcription	Ovary	ovary
40	chr11:45241000-45251000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:45241000-45252400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:45241200-45248000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:45241200-45250800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:45241400-45247600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:45241400-45250600	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:45241800-45251200	Strong transcription	Fetal Lung	lung
47	chr11:45242000-45249600	Strong transcription	Primary hematopoietic stem cells	blood
48	chr11:45242200-45249800	Strong transcription	Fetal Brain Female	brain
49	chr11:45242400-45249800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:45242600-45249600	Strong transcription	Rectal Mucosa Donor 29	rectum

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