Variant report

Variant	rs4556531
Chromosome Location	chr11:45260892-45260893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45255205..45258330-chr11:45259117..45261046,3	K562	blood:

Variant related genes	Relation type
ENSG00000254664	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1075778	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10769133	0.86[ASN][1000 genomes]
rs10769134	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs10769135	0.81[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs10769136	0.88[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1077490	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1077491	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs10838437	0.94[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs10838438	0.89[ASN][1000 genomes]
rs11038354	0.93[JPT][hapmap]
rs11038358	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11038360	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11038363	0.84[ASN][1000 genomes]
rs11038372	0.91[ASN][1000 genomes]
rs11038382	0.81[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11038384	0.82[ASN][1000 genomes]
rs11604409	0.87[ASN][1000 genomes]
rs12363398	0.81[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12363412	0.83[ASN][1000 genomes]
rs2289448	0.81[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2863176	0.92[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.82[TSI][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2863178	0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs2863181	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2863182	0.82[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2902429	0.94[ASN][1000 genomes]
rs2902433	0.81[ASN][1000 genomes]
rs34191816	0.81[ASN][1000 genomes]
rs3758719	0.82[ASN][1000 genomes]
rs3758726	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4556529	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs4755306	0.87[JPT][hapmap]
rs4755943	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4755945	0.90[ASN][1000 genomes]
rs4992029	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs6485603	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6485605	0.95[ASN][1000 genomes]
rs6485607	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6485608	0.87[JPT][hapmap]
rs7110580	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.82[TSI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114339	0.87[ASN][1000 genomes]
rs7117240	0.92[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.95[ASN][1000 genomes]
rs7119605	0.93[JPT][hapmap]
rs7123698	0.85[ASN][1000 genomes]
rs7123765	0.85[ASN][1000 genomes]
rs7127746	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs731102	0.93[JPT][hapmap]
rs7395289	0.82[ASN][1000 genomes]
rs7395357	0.87[JPT][hapmap]
rs7395419	0.86[JPT][hapmap]
rs7395421	0.86[JPT][hapmap]
rs7396488	0.87[JPT][hapmap]
rs751196	0.88[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs7943596	0.82[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs8929	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300051	0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45239800-45265400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:45248800-45274200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:45249800-45273800	Weak transcription	Spleen	Spleen
4	chr11:45252600-45264600	Weak transcription	Fetal Intestine Large	intestine
5	chr11:45255800-45273800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:45257000-45264600	Weak transcription	Fetal Intestine Small	intestine
7	chr11:45259000-45261200	Enhancers	Fetal Stomach	stomach
8	chr11:45259800-45261000	Enhancers	NH-A	brain
9	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
10	chr11:45260000-45261000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:45260000-45261000	Enhancers	HSMMtube	muscle
12	chr11:45260000-45261200	Weak transcription	Fetal Brain Female	brain
13	chr11:45260000-45265800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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