Variant report

Variant	rs7123698
Chromosome Location	chr11:45289093-45289094
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1075778	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769133	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769134	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769135	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10769136	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1077490	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1077491	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838437	0.89[ASN][1000 genomes]
rs10838438	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11038372	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038382	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11038384	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11604409	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12363398	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12363412	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289448	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2863176	0.84[ASN][1000 genomes]
rs2863178	0.87[ASN][1000 genomes]
rs2863181	0.92[ASN][1000 genomes]
rs2863182	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2902429	0.89[ASN][1000 genomes]
rs2902433	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34191816	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4556529	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4556531	0.85[ASN][1000 genomes]
rs4755306	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4755943	0.83[ASN][1000 genomes]
rs4992029	0.89[ASN][1000 genomes]
rs6485603	0.84[ASN][1000 genomes]
rs6485605	0.89[ASN][1000 genomes]
rs6485607	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485608	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485609	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110580	0.85[ASN][1000 genomes]
rs7114339	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117240	0.88[ASN][1000 genomes]
rs7123765	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127746	0.84[ASN][1000 genomes]
rs7395289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7395357	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7395419	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7395421	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7396488	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs751196	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943596	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8929	0.85[ASN][1000 genomes]
rs9300051	0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7123698	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45284400-45290200	Enhancers	Fetal Intestine Large	intestine
2	chr11:45287000-45289600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:45287400-45289800	Weak transcription	Fetal Brain Female	brain
4	chr11:45288400-45289600	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:45288600-45289800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:45288600-45290000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:45288800-45289200	Enhancers	Right Ventricle	heart
8	chr11:45288800-45289200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr11:45288800-45289600	Enhancers	Colonic Mucosa	Colon
10	chr11:45288800-45289800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:45288800-45289800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:45288800-45290400	Genic enhancers	Fetal Intestine Small	intestine
13	chr11:45289000-45289600	Weak transcription	Pancreas	Pancrea
14	chr11:45289000-45289800	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr11:45289000-45289800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
16	chr11:45289000-45290000	Flanking Active TSS	A549	lung
17	chr11:45289000-45292600	Weak transcription	Gastric	stomach

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