Variant report

Variant	rs10769133
Chromosome Location	chr11:45290513-45290514
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45286703..45288626-chr11:45290433..45293334,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1075778	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10769135	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10769136	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1077490	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1077491	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838437	0.90[ASN][1000 genomes]
rs10838438	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11038372	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11038382	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038384	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038388	0.82[EUR][1000 genomes]
rs11604409	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12363398	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12363412	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12791607	0.82[EUR][1000 genomes]
rs2289448	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2863176	0.85[ASN][1000 genomes]
rs2863178	0.87[ASN][1000 genomes]
rs2863181	0.93[ASN][1000 genomes]
rs2863182	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2902429	0.88[ASN][1000 genomes]
rs2902433	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34191816	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4073405	0.80[EUR][1000 genomes]
rs4556529	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4556531	0.86[ASN][1000 genomes]
rs4755306	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755943	0.84[ASN][1000 genomes]
rs4992029	0.90[ASN][1000 genomes]
rs6485603	0.85[ASN][1000 genomes]
rs6485605	0.90[ASN][1000 genomes]
rs6485607	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485608	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6485609	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7110580	0.86[ASN][1000 genomes]
rs7112865	0.81[EUR][1000 genomes]
rs7114339	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7117240	0.89[ASN][1000 genomes]
rs7123698	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7123765	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127746	0.85[ASN][1000 genomes]
rs7131438	0.81[EUR][1000 genomes]
rs7395289	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7395357	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7395419	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7395421	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7396488	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs751196	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7943596	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8929	0.86[ASN][1000 genomes]
rs9300051	0.88[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10769133	SYT13	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45289000-45292600	Weak transcription	Gastric	stomach
2	chr11:45289800-45294400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:45289800-45294600	Weak transcription	Pancreas	Pancrea
4	chr11:45290000-45290800	Enhancers	A549	lung
5	chr11:45290200-45291800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:45290200-45294600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:45290400-45293400	Enhancers	Fetal Intestine Small	intestine

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