Variant report

Variant	rs7112865
Chromosome Location	chr11:45326538-45326539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10742750	0.81[EUR][1000 genomes]
rs1075778	0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10769133	0.81[EUR][1000 genomes]
rs10769134	0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10769135	0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10769136	0.93[JPT][hapmap]
rs1077490	0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs1077491	0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs10838437	0.87[JPT][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs10838442	0.94[AFR][1000 genomes]
rs10838444	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11038360	0.81[JPT][hapmap]
rs11038382	0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11038384	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11038388	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11038390	0.98[ASN][1000 genomes]
rs11530155	0.97[ASN][1000 genomes]
rs11604409	0.80[EUR][1000 genomes]
rs12363398	0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12363412	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12791607	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289448	0.94[JPT][hapmap]
rs2863176	0.81[JPT][hapmap]
rs2863178	0.87[JPT][hapmap]
rs2863181	0.94[JPT][hapmap]
rs2863182	0.94[JPT][hapmap]
rs34191816	0.84[EUR][1000 genomes]
rs34801223	0.97[ASN][1000 genomes]
rs4073405	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4556529	0.87[JPT][hapmap]
rs4556531	0.81[JPT][hapmap]
rs4755306	0.94[JPT][hapmap]
rs4755943	0.81[JPT][hapmap]
rs4755962	0.84[ASN][1000 genomes]
rs4755965	0.85[ASN][1000 genomes]
rs4755966	0.84[ASN][1000 genomes]
rs4755967	0.84[ASN][1000 genomes]
rs4992029	0.87[JPT][hapmap]
rs6416133	0.84[ASN][1000 genomes]
rs6485603	0.81[JPT][hapmap]
rs6485607	0.94[JPT][hapmap]
rs6485608	0.94[JPT][hapmap]
rs6485613	0.86[ASN][1000 genomes]
rs6485614	0.85[ASN][1000 genomes]
rs6485616	0.84[ASN][1000 genomes]
rs7106802	0.84[ASN][1000 genomes]
rs7110287	0.80[ASN][1000 genomes]
rs7110580	0.81[JPT][hapmap]
rs7114339	0.80[EUR][1000 genomes]
rs7117240	0.87[JPT][hapmap]
rs7118844	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122933	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7123438	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123765	0.81[EUR][1000 genomes]
rs7124597	0.84[ASN][1000 genomes]
rs7127746	0.81[JPT][hapmap]
rs7130748	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7131174	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7131438	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7395289	0.85[EUR][1000 genomes]
rs7395357	0.94[JPT][hapmap]
rs7395419	0.93[JPT][hapmap]
rs7395421	0.93[JPT][hapmap]
rs7396488	0.94[JPT][hapmap]
rs7480175	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7480542	0.84[ASN][1000 genomes]
rs7483595	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs751196	0.87[JPT][hapmap]
rs7943596	0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs7946683	0.84[ASN][1000 genomes]
rs8929	0.81[JPT][hapmap]
rs9300051	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7112865	SYT13	cis	cerebellum	SCAN
rs7112865	LRP4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45326400-45327000	Bivalent Enhancer	GM12878-XiMat	blood
2	chr11:45326400-45344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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