Variant report

Variant	rs10742750
Chromosome Location	chr11:45356863-45356864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10838444	0.92[EUR][1000 genomes]
rs4073405	0.81[EUR][1000 genomes]
rs4755975	0.99[ASN][1000 genomes]
rs6485619	0.82[ASN][1000 genomes]
rs6485620	0.95[ASN][1000 genomes]
rs7112723	0.85[ASN][1000 genomes]
rs7112865	0.81[EUR][1000 genomes]
rs7131438	0.80[EUR][1000 genomes]
rs7482739	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7483595	0.85[EUR][1000 genomes]
rs7925771	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2537828	chr11:45356121-45357741	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv2254869	chr11:45356298-45357379	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3350634	chr11:45356804-45357145	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45353400-45357800	Enhancers	Fetal Muscle Leg	muscle
2	chr11:45353800-45357000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:45354400-45359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:45355200-45361000	Weak transcription	Fetal Kidney	kidney
5	chr11:45355600-45359400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:45355600-45359600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:45355600-45361200	Weak transcription	Fetal Stomach	stomach
8	chr11:45356200-45360600	Weak transcription	Fetal Brain Male	brain
9	chr11:45356400-45361000	Weak transcription	Fetal Brain Female	brain
10	chr11:45356800-45357400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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