Variant report

Variant	rs7482739
Chromosome Location	chr11:45354166-45354167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:45273665..45274202-chr11:45354083..45354636,2	K562	blood:
2	chr11:45304830..45305456-chr11:45353640..45354631,2	K562	blood:
3	chr11:45354038..45357345-chr11:45359255..45361825,3	K562	blood:
4	chr11:45204656..45205178-chr11:45353681..45354216,2	MCF-7	breast:
5	chr11:45131918..45132817-chr11:45353622..45354653,9	K562	blood:
6	chr11:45124654..45125507-chr11:45353678..45354330,2	K562	blood:
7	chr11:45204224..45207572-chr11:45353935..45355578,3	MCF-7	breast:
8	chr11:45132082..45133595-chr11:45353521..45354803,7	MCF-7	breast:
9	chr11:44957512..44958657-chr11:45353637..45354697,3	K562	blood:
10	chr11:45273694..45274393-chr11:45353843..45354665,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175274	Chromatin interaction
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10742750	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838444	0.88[EUR][1000 genomes]
rs4755975	0.94[ASN][1000 genomes]
rs6485619	0.86[ASN][1000 genomes]
rs6485620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7112723	0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7123438	0.81[EUR][1000 genomes]
rs7480175	0.81[EUR][1000 genomes]
rs7483595	0.91[EUR][1000 genomes]
rs7925771	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45353400-45354200	Enhancers	Osteobl	bone
2	chr11:45353400-45357800	Enhancers	Fetal Muscle Leg	muscle
3	chr11:45353600-45354200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:45353600-45354200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:45353600-45354400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
6	chr11:45353600-45354400	Enhancers	Fetal Brain Male	brain
7	chr11:45353600-45354400	Enhancers	NHDF-Ad	bronchial
8	chr11:45353600-45354600	Enhancers	Brain Germinal Matrix	brain
9	chr11:45353600-45354800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:45353600-45355400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:45353800-45354200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:45353800-45354200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:45353800-45354200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr11:45353800-45354200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:45353800-45354400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:45353800-45354400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:45353800-45354400	Enhancers	Fetal Lung	lung
18	chr11:45353800-45354600	Enhancers	Fetal Brain Female	brain
19	chr11:45353800-45354600	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
20	chr11:45353800-45354600	Enhancers	NH-A	brain
21	chr11:45353800-45354600	Bivalent Enhancer	NHEK	skin
22	chr11:45353800-45355600	Enhancers	Fetal Heart	heart
23	chr11:45353800-45355600	Enhancers	HUVEC	blood vessel
24	chr11:45353800-45357000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:45354000-45354400	Enhancers	NHLF	lung
26	chr11:45354000-45354600	Enhancers	A549	lung
27	chr11:45354000-45355600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links