Variant report

Variant	rs7480542
Chromosome Location	chr11:45338627-45338628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45335928..45338773-chr11:45344348..45346925,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10742748	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10742749	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1075778	0.87[JPT][hapmap]
rs10769134	0.87[JPT][hapmap]
rs10769135	0.87[JPT][hapmap]
rs10769136	0.86[JPT][hapmap]
rs10769138	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1077490	0.87[JPT][hapmap]
rs1077491	0.87[JPT][hapmap]
rs10838437	0.93[JPT][hapmap]
rs10838444	0.95[ASN][1000 genomes]
rs10838446	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11038354	0.80[JPT][hapmap]
rs11038358	0.80[JPT][hapmap]
rs11038360	0.87[JPT][hapmap]
rs11038382	0.87[JPT][hapmap]
rs11038390	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11530155	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12363398	0.87[JPT][hapmap]
rs2289448	0.87[JPT][hapmap]
rs2863176	0.87[JPT][hapmap]
rs2863178	0.93[JPT][hapmap]
rs2863181	0.87[JPT][hapmap]
rs2863182	0.87[JPT][hapmap]
rs34801223	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3758726	0.80[JPT][hapmap]
rs4073405	0.84[ASN][1000 genomes]
rs4556529	0.81[JPT][hapmap]
rs4556531	0.87[JPT][hapmap]
rs4755306	0.87[JPT][hapmap]
rs4755314	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4755943	0.87[JPT][hapmap]
rs4755962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755965	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4755966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755967	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755969	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4755970	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4755975	0.81[EUR][1000 genomes]
rs4992029	0.93[JPT][hapmap]
rs6416133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485603	0.87[JPT][hapmap]
rs6485607	0.87[JPT][hapmap]
rs6485608	0.87[JPT][hapmap]
rs6485613	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485614	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6485615	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485619	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6485620	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7106802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110287	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110580	0.87[JPT][hapmap]
rs7112192	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7112723	0.85[EUR][1000 genomes]
rs7112865	0.84[ASN][1000 genomes]
rs7117240	0.93[JPT][hapmap]
rs7118844	0.87[ASN][1000 genomes]
rs7119605	0.80[JPT][hapmap]
rs7122933	0.86[ASN][1000 genomes]
rs7123438	0.87[ASN][1000 genomes]
rs7124597	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127746	0.87[JPT][hapmap]
rs7130748	0.87[ASN][1000 genomes]
rs7131174	0.87[ASN][1000 genomes]
rs7131438	0.85[ASN][1000 genomes]
rs7395357	0.87[JPT][hapmap]
rs7395419	0.87[JPT][hapmap]
rs7395421	0.86[JPT][hapmap]
rs7396488	0.87[JPT][hapmap]
rs7478974	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7479052	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7480175	0.87[ASN][1000 genomes]
rs7483595	0.94[ASN][1000 genomes]
rs751196	0.93[JPT][hapmap]
rs7925771	0.81[EUR][1000 genomes]
rs7943596	0.87[JPT][hapmap]
rs7946683	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8929	0.87[JPT][hapmap]
rs9300051	0.94[JPT][hapmap]
rs9667484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45326400-45344200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45338200-45338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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