Variant report

Variant	rs6082
Chromosome Location	chr15:58837957-58837958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58813058..58816667-chr15:58837255..58840517,3	MCF-7	breast:
2	chr15:58836656..58842196-chr15:58843431..58849915,8	K562	blood:
3	chr15:58810857..58816650-chr15:58835363..58842392,10	K562	blood:
4	chr15:58821255..58823179-chr15:58836509..58838748,2	K562	blood:

Variant related genes	Relation type
ENSG00000259476	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12592127	0.87[JPT][hapmap]
rs12595265	0.94[EUR][1000 genomes]
rs2242065	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs4774304	0.94[EUR][1000 genomes]
rs4775075	0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58821600-58838000	Weak transcription	Right Atrium	heart
2	chr15:58827600-58843400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:58828400-58838000	Weak transcription	HepG2	liver
4	chr15:58828600-58839000	Weak transcription	Pancreas	Pancrea
5	chr15:58829000-58847600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:58829400-58838200	Strong transcription	Liver	Liver
7	chr15:58832200-58838000	Weak transcription	HSMMtube	muscle
8	chr15:58835600-58843200	Weak transcription	Thymus	Thymus
9	chr15:58836000-58838400	Enhancers	K562	blood
10	chr15:58836200-58838600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:58836200-58839000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr15:58836400-58838000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:58836400-58838600	Enhancers	Dnd41	blood
14	chr15:58836600-58838600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:58836800-58838200	Enhancers	Fetal Brain Male	brain
16	chr15:58836800-58838600	Enhancers	Primary T cells fromperipheralblood	blood
17	chr15:58837000-58838400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr15:58837000-58838400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:58837000-58838400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr15:58837000-58838600	Enhancers	Primary T cells from cord blood	blood
21	chr15:58837000-58838800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr15:58837000-58840600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:58837000-58848400	Enhancers	Fetal Thymus	thymus
24	chr15:58837200-58838200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr15:58837200-58838400	Weak transcription	Ovary	ovary
26	chr15:58837200-58838400	Enhancers	A549	lung
27	chr15:58837200-58838800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr15:58837200-58839000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr15:58837400-58838000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr15:58837400-58839200	Enhancers	NH-A	brain
31	chr15:58837400-58840400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:58837400-58843000	Enhancers	Fetal Heart	heart
33	chr15:58837600-58838600	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr15:58837600-58840600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr15:58837800-58838000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr15:58837800-58838800	Enhancers	Spleen	Spleen
37	chr15:58837800-58839200	Enhancers	Hela-S3	cervix
38	chr15:58837800-58840800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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