Variant report

Variant	rs60828897
Chromosome Location	chr3:67376926-67376927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs72918943	1.00[AMR][1000 genomes]
rs72918957	1.00[AMR][1000 genomes]
rs72918980	1.00[AMR][1000 genomes]
rs72918987	1.00[AMR][1000 genomes]
rs72918992	1.00[AMR][1000 genomes]
rs72923138	1.00[AMR][1000 genomes]
rs72923169	1.00[AMR][1000 genomes]
rs72923174	1.00[AMR][1000 genomes]
rs73834518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73836623	0.94[AFR][1000 genomes]
rs7620069	1.00[AMR][1000 genomes]
rs9830987	1.00[AMR][1000 genomes]
rs9853254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67376800-67377800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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