Variant report

Variant	rs60828997
Chromosome Location	chr16:70327832-70327833
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13334712	1.00[EUR][1000 genomes]
rs13337437	1.00[EUR][1000 genomes]
rs1979594	1.00[EUR][1000 genomes]
rs57301833	1.00[EUR][1000 genomes]
rs7193598	1.00[EUR][1000 genomes]
rs7200034	1.00[EUR][1000 genomes]
rs7200891	1.00[EUR][1000 genomes]
rs891138	1.00[EUR][1000 genomes]
rs9924352	1.00[EUR][1000 genomes]
rs9927480	1.00[EUR][1000 genomes]
rs9931779	1.00[EUR][1000 genomes]
rs9934707	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833271	chr16:70185694-70353334	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1061286	chr16:70253809-70331407	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv906871	chr16:70302333-70375873	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv906872	chr16:70303418-70356746	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv960356	chr16:70318585-70339325	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70324000-70332400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr16:70324000-70332600	Weak transcription	NHEK	skin
3	chr16:70324000-70332800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr16:70324200-70329000	Weak transcription	HepG2	liver
5	chr16:70324200-70332400	Weak transcription	Colonic Mucosa	Colon
6	chr16:70324200-70332400	Weak transcription	Fetal Muscle Leg	muscle
7	chr16:70324200-70332600	Weak transcription	Placenta	Placenta
8	chr16:70324400-70332400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr16:70324800-70328400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr16:70325400-70332400	Weak transcription	HUVEC	blood vessel
11	chr16:70327800-70328600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links