Variant report

Variant	rs7200891
Chromosome Location	chr16:70461416-70461417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr16:70461414-70463315	GM12878	blood:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70460654..70463688-chr16:70486479..70491929,8	K562	blood:
2	chr16:70460905..70463881-chr16:70561483..70564256,3	K562	blood:
3	chr16:70446187..70457827-chr16:70459568..70470659,26	K562	blood:
4	chr16:70321686..70323395-chr16:70461245..70463196,2	K562	blood:
5	chr16:70460677..70462576-chr16:70471554..70473465,2	MCF-7	breast:
6	chr16:70321779..70324501-chr16:70460987..70463686,2	K562	blood:
7	chr16:70440879..70444022-chr16:70460685..70463033,4	K562	blood:
8	chr16:70461008..70469152-chr16:70556160..70559876,10	K562	blood:
9	chr16:70451324..70453195-chr16:70460758..70462276,2	MCF-7	breast:
10	chr16:70440964..70444815-chr16:70460997..70465510,6	K562	blood:
11	chr16:70460964..70466132-chr16:70555553..70559173,8	K562	blood:

No data

Variant related genes	Relation type
ST3GAL2	TF binding region
ENSG00000157353	Chromatin interaction
ENSG00000221514	Chromatin interaction
ENSG00000157350	Chromatin interaction
ENSG00000189091	Chromatin interaction
ENSG00000090861	Chromatin interaction
ENSG00000103051	Chromatin interaction
ENSG00000157349	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12102388	0.87[AMR][1000 genomes]
rs13330945	0.87[AMR][1000 genomes]
rs13334712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13337437	1.00[EUR][1000 genomes]
rs13337689	0.87[AMR][1000 genomes]
rs1979594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28613466	0.87[AMR][1000 genomes]
rs57301833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60575688	0.87[AMR][1000 genomes]
rs60828997	1.00[EUR][1000 genomes]
rs7193598	1.00[EUR][1000 genomes]
rs7200034	1.00[EUR][1000 genomes]
rs7202133	0.87[AMR][1000 genomes]
rs8045340	1.00[AMR][1000 genomes]
rs8057766	0.87[AMR][1000 genomes]
rs891138	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921696	0.87[AMR][1000 genomes]
rs9924352	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9925510	0.87[AMR][1000 genomes]
rs9927480	1.00[EUR][1000 genomes]
rs9931779	1.00[EUR][1000 genomes]
rs9934707	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70433200-70461600	Weak transcription	Aorta	Aorta
2	chr16:70433400-70461600	Weak transcription	Brain Substantia Nigra	brain
3	chr16:70433600-70461600	Weak transcription	Colon Smooth Muscle	Colon
4	chr16:70438400-70461600	Weak transcription	HSMM	muscle
5	chr16:70438600-70461600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:70438600-70461600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr16:70441800-70461600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr16:70445000-70461800	Weak transcription	Brain Germinal Matrix	brain
9	chr16:70445200-70461600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr16:70446400-70461600	Weak transcription	HSMMtube	muscle
11	chr16:70448000-70464200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr16:70448400-70461800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr16:70452800-70461800	Weak transcription	Fetal Brain Female	brain
14	chr16:70453200-70461600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr16:70453400-70461600	Weak transcription	Fetal Brain Male	brain
16	chr16:70453600-70461600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr16:70453800-70461600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr16:70453800-70470800	Genic enhancers	Fetal Intestine Small	intestine
19	chr16:70454200-70461600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:70454400-70461600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr16:70454400-70461800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr16:70454400-70461800	Weak transcription	Esophagus	oesophagus
23	chr16:70455200-70461600	Weak transcription	Brain Hippocampus Middle	brain
24	chr16:70455200-70461800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr16:70455400-70461600	Weak transcription	Brain Angular Gyrus	brain
26	chr16:70455600-70461600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr16:70455600-70461600	Weak transcription	Pancreas	Pancrea
28	chr16:70455600-70461800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr16:70455800-70461600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr16:70455800-70461600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr16:70455800-70461600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr16:70455800-70461600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr16:70455800-70461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr16:70455800-70462000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr16:70456800-70461600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr16:70457000-70461600	Weak transcription	Liver	Liver
37	chr16:70457000-70462000	Weak transcription	NHEK	skin
38	chr16:70457200-70461600	Weak transcription	Right Atrium	heart
39	chr16:70457200-70461600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr16:70457400-70461600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr16:70457600-70461600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr16:70457600-70461600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr16:70458000-70461600	Weak transcription	Colonic Mucosa	Colon
44	chr16:70458000-70468400	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr16:70458200-70461600	Weak transcription	HMEC	breast
46	chr16:70458200-70461600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr16:70459000-70461600	Weak transcription	Brain Anterior Caudate	brain
48	chr16:70459200-70461600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr16:70459200-70461600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr16:70459200-70462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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