Variant report

Variant	rs13337689
Chromosome Location	chr16:70447368-70447369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:70446424..70449137-chr16:70556748..70559394,2	K562	blood:
2	chr16:70439475..70441412-chr16:70446469..70448623,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103051	Chromatin interaction
ENSG00000189091	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11863394	1.00[EUR][1000 genomes]
rs12102388	1.00[AMR][1000 genomes]
rs13330945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334712	0.87[AMR][1000 genomes]
rs13338441	1.00[EUR][1000 genomes]
rs13339561	1.00[EUR][1000 genomes]
rs13339593	1.00[EUR][1000 genomes]
rs13339643	1.00[EUR][1000 genomes]
rs17878662	1.00[EUR][1000 genomes]
rs17879275	1.00[EUR][1000 genomes]
rs17881316	1.00[EUR][1000 genomes]
rs17886111	1.00[EUR][1000 genomes]
rs1979594	0.87[AMR][1000 genomes]
rs28613466	1.00[AMR][1000 genomes]
rs57301833	0.87[AMR][1000 genomes]
rs60575688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7188297	1.00[EUR][1000 genomes]
rs7188474	1.00[EUR][1000 genomes]
rs7188808	1.00[EUR][1000 genomes]
rs7192936	1.00[EUR][1000 genomes]
rs7196773	1.00[EUR][1000 genomes]
rs7199312	1.00[EUR][1000 genomes]
rs7200891	0.87[AMR][1000 genomes]
rs7202133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045340	0.87[AMR][1000 genomes]
rs8047189	1.00[EUR][1000 genomes]
rs8057766	1.00[AMR][1000 genomes]
rs8059200	1.00[EUR][1000 genomes]
rs8061243	1.00[EUR][1000 genomes]
rs8061431	1.00[EUR][1000 genomes]
rs8062414	1.00[EUR][1000 genomes]
rs8062794	1.00[EUR][1000 genomes]
rs891138	0.87[AMR][1000 genomes]
rs9921696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9922969	1.00[EUR][1000 genomes]
rs9923656	1.00[EUR][1000 genomes]
rs9924352	0.87[AMR][1000 genomes]
rs9925510	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9926435	1.00[EUR][1000 genomes]
rs9929182	1.00[EUR][1000 genomes]
rs9933510	1.00[EUR][1000 genomes]
rs9940592	1.00[EUR][1000 genomes]
rs9940654	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70428800-70450400	Weak transcription	Fetal Kidney	kidney
2	chr16:70432800-70454800	Weak transcription	Pancreas	Pancrea
3	chr16:70432800-70457000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:70433200-70461600	Weak transcription	Aorta	Aorta
5	chr16:70433400-70461600	Weak transcription	Brain Substantia Nigra	brain
6	chr16:70433600-70461600	Weak transcription	Colon Smooth Muscle	Colon
7	chr16:70434400-70448000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr16:70435000-70451400	Weak transcription	Fetal Brain Female	brain
9	chr16:70438400-70450800	Weak transcription	Small Intestine	intestine
10	chr16:70438400-70461600	Weak transcription	HSMM	muscle
11	chr16:70438600-70448200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr16:70438600-70450600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr16:70438600-70461600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr16:70438600-70461600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr16:70438800-70450600	Weak transcription	NHDF-Ad	bronchial
16	chr16:70438800-70450600	Weak transcription	NHLF	lung
17	chr16:70439000-70450600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr16:70439000-70453400	Weak transcription	A549	lung
19	chr16:70439200-70448200	Weak transcription	Hela-S3	cervix
20	chr16:70439200-70452000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr16:70439200-70454800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr16:70439200-70458600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:70441000-70453000	Weak transcription	Dnd41	blood
24	chr16:70441800-70461600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr16:70442000-70448200	Weak transcription	Gastric	stomach
26	chr16:70442000-70452800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr16:70442200-70448000	Weak transcription	Adipose Nuclei	Adipose
28	chr16:70442200-70448200	Weak transcription	Left Ventricle	heart
29	chr16:70442200-70448200	Weak transcription	Psoas Muscle	Psoas
30	chr16:70442200-70448200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr16:70442200-70458600	Weak transcription	NH-A	brain
32	chr16:70442400-70448000	Weak transcription	Fetal Heart	heart
33	chr16:70442400-70451200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr16:70442400-70452000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr16:70442400-70454200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr16:70442600-70448200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr16:70442600-70448200	Weak transcription	Right Atrium	heart
38	chr16:70442600-70448200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr16:70442600-70450000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr16:70442600-70450600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr16:70442600-70450600	Weak transcription	Spleen	Spleen
42	chr16:70442600-70451000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr16:70442600-70454200	Weak transcription	Ovary	ovary
44	chr16:70442800-70450200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr16:70442800-70451000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr16:70442800-70452400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr16:70443000-70448200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr16:70443000-70450000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr16:70443000-70451200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr16:70443000-70451400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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