Variant report

Variant	rs9926435
Chromosome Location	chr16:70518707-70518708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70505499..70507933-chr16:70517566..70519175,2	MCF-7	breast:
2	chr16:70510922..70516361-chr16:70517334..70521909,5	K562	blood:
3	chr16:70441331..70443515-chr16:70517250..70519434,2	K562	blood:
4	chr16:70513484..70515449-chr16:70517366..70519641,2	K562	blood:
5	chr16:70503488..70506383-chr16:70517357..70519879,2	MCF-7	breast:
6	chr16:70509985..70511741-chr16:70516736..70518962,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157353	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11863394	1.00[EUR][1000 genomes]
rs13330945	1.00[EUR][1000 genomes]
rs13331220	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334577	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13337689	1.00[EUR][1000 genomes]
rs13338441	1.00[EUR][1000 genomes]
rs13339216	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13339561	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339593	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970226	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970240	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970243	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970253	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970259	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970260	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17878662	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17879275	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17881316	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17885165	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17886111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28419202	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28438025	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475204	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28619389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28777081	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55667445	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55885171	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55926204	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56189591	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57451547	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58142695	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58144908	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59158714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59460917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60575688	1.00[EUR][1000 genomes]
rs60757048	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61641432	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7184876	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7185011	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7186436	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7188474	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7188808	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7191191	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7192936	1.00[EUR][1000 genomes]
rs7193228	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196773	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7199312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7200978	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7202133	1.00[EUR][1000 genomes]
rs73573163	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573175	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578819	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8047593	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8049929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8050767	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs8051473	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8051618	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8057327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8057732	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058754	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8059200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061243	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061431	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062414	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062794	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9302615	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921410	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921696	1.00[EUR][1000 genomes]
rs9922969	1.00[EUR][1000 genomes]
rs9925510	1.00[EUR][1000 genomes]
rs9926355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9928617	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9928808	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929354	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929882	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933022	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9933510	1.00[EUR][1000 genomes]
rs9936085	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9937769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9939252	0.83[AFR][1000 genomes]
rs9940353	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70489400-70556400	Weak transcription	Stomach Mucosa	stomach
2	chr16:70495000-70519000	Strong transcription	Primary T cells from cord blood	blood
3	chr16:70501200-70535800	Strong transcription	Fetal Intestine Small	intestine
4	chr16:70501400-70535200	Strong transcription	Fetal Intestine Large	intestine
5	chr16:70501400-70536400	Strong transcription	Fetal Stomach	stomach
6	chr16:70503800-70522200	Strong transcription	Sigmoid Colon	Sigmoid Colon
7	chr16:70504200-70524800	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr16:70504200-70532000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr16:70504400-70535200	Strong transcription	Liver	Liver
10	chr16:70506200-70518800	Strong transcription	Brain Cingulate Gyrus	brain
11	chr16:70506200-70524000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr16:70506400-70535200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr16:70506600-70522800	Weak transcription	Fetal Brain Male	brain
14	chr16:70506600-70535400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr16:70507000-70518800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr16:70507000-70518800	Strong transcription	Fetal Brain Female	brain
17	chr16:70507000-70520400	Strong transcription	Brain Anterior Caudate	brain
18	chr16:70510600-70519000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr16:70510800-70518800	Strong transcription	Primary B cells from cord blood	blood
20	chr16:70511000-70527400	Weak transcription	Psoas Muscle	Psoas
21	chr16:70511400-70526200	Strong transcription	Thymus	Thymus
22	chr16:70511600-70524200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr16:70511800-70518800	Strong transcription	Dnd41	blood
24	chr16:70511800-70524800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:70511800-70535600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr16:70512000-70518800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr16:70512000-70518800	Strong transcription	Ovary	ovary
28	chr16:70512000-70519000	Strong transcription	Brain Germinal Matrix	brain
29	chr16:70512000-70524600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr16:70512000-70535400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr16:70512200-70518800	Strong transcription	Brain Angular Gyrus	brain
32	chr16:70512200-70520600	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr16:70512200-70521200	Strong transcription	Fetal Thymus	thymus
34	chr16:70512600-70518800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr16:70512800-70518800	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr16:70512800-70524200	Strong transcription	Fetal Muscle Leg	muscle
37	chr16:70512800-70533600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr16:70512800-70556400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr16:70513000-70519000	Strong transcription	Brain Hippocampus Middle	brain
40	chr16:70513000-70528000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr16:70513000-70528600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr16:70513200-70518800	Strong transcription	Esophagus	oesophagus
43	chr16:70513200-70518800	Strong transcription	Fetal Lung	lung
44	chr16:70513200-70522000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr16:70513600-70522600	Strong transcription	Adipose Nuclei	Adipose
46	chr16:70513600-70527600	Weak transcription	Right Atrium	heart
47	chr16:70513800-70519600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr16:70513800-70520800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr16:70513800-70532200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr16:70514000-70520600	Strong transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links