Variant report

Variant	rs6499318
Chromosome Location	chr16:70532890-70532891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70527732..70530279-chr16:70532038..70535030,2	MCF-7	breast:
2	chr16:70527042..70530041-chr16:70532167..70534758,2	K562	blood:
3	chr16:70522527..70524486-chr16:70532173..70534316,2	K562	blood:

Variant related genes	Relation type
ENSG00000103051	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs13331220	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334577	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13339216	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339561	1.00[AMR][1000 genomes]
rs13339593	1.00[AMR][1000 genomes]
rs13339643	1.00[AMR][1000 genomes]
rs16970226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970240	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970243	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970253	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970259	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970260	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17878662	1.00[AMR][1000 genomes]
rs17879275	1.00[AMR][1000 genomes]
rs17881316	1.00[AMR][1000 genomes]
rs17885165	1.00[AMR][1000 genomes]
rs17886111	1.00[AMR][1000 genomes]
rs28419202	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28438025	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475204	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28619389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28777081	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55667445	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55885171	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55926204	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56189591	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57451547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58142695	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58144908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59158714	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59460917	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60757048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61641432	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7184876	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7185011	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7186436	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7188297	1.00[AMR][1000 genomes]
rs7188474	1.00[AMR][1000 genomes]
rs7188808	1.00[AMR][1000 genomes]
rs7191191	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7193228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196773	1.00[AMR][1000 genomes]
rs7199312	1.00[AMR][1000 genomes]
rs7200586	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573175	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73578819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8047593	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8049929	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8050767	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs8051473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8051618	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8057327	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8057732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058754	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8059200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8061243	1.00[AMR][1000 genomes]
rs8061431	1.00[AMR][1000 genomes]
rs8062414	1.00[AMR][1000 genomes]
rs8062794	1.00[AMR][1000 genomes]
rs9302615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921410	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926355	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926435	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9928617	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9928808	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929354	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929882	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932065	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9932939	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9933022	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9936085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9937769	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9939252	0.85[AFR][1000 genomes]
rs9940353	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	esv2830027	chr16:70473934-70558039	Genic enhancers Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70489400-70556400	Weak transcription	Stomach Mucosa	stomach
2	chr16:70501200-70535800	Strong transcription	Fetal Intestine Small	intestine
3	chr16:70501400-70535200	Strong transcription	Fetal Intestine Large	intestine
4	chr16:70501400-70536400	Strong transcription	Fetal Stomach	stomach
5	chr16:70504400-70535200	Strong transcription	Liver	Liver
6	chr16:70506400-70535200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr16:70506600-70535400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr16:70511800-70535600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:70512000-70535400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr16:70512800-70533600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:70512800-70556400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr16:70517600-70538800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr16:70518000-70545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:70519800-70533400	Strong transcription	Duodenum Mucosa	Duodenum
15	chr16:70523200-70535200	Strong transcription	Brain Germinal Matrix	brain
16	chr16:70523200-70542400	Weak transcription	Hela-S3	cervix
17	chr16:70523400-70535200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr16:70523400-70535200	Strong transcription	Dnd41	blood
19	chr16:70524400-70542400	Weak transcription	Fetal Brain Male	brain
20	chr16:70524600-70535200	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr16:70525200-70535200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr16:70525400-70535800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr16:70525600-70533400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr16:70525600-70534000	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr16:70525600-70535400	Strong transcription	Fetal Muscle Leg	muscle
26	chr16:70525600-70535800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr16:70525600-70538200	Strong transcription	Fetal Thymus	thymus
28	chr16:70525800-70533200	Strong transcription	Osteobl	bone
29	chr16:70525800-70533400	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr16:70525800-70533800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr16:70525800-70535200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr16:70525800-70535200	Strong transcription	Adipose Nuclei	Adipose
33	chr16:70525800-70535600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr16:70525800-70535600	Strong transcription	Placenta	Placenta
35	chr16:70525800-70535800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr16:70525800-70537000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr16:70526000-70539000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr16:70526600-70533400	Strong transcription	Ovary	ovary
39	chr16:70526600-70536000	Strong transcription	Thymus	Thymus
40	chr16:70526800-70533000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr16:70526800-70533600	Strong transcription	Brain Cingulate Gyrus	brain
42	chr16:70526800-70534200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr16:70526800-70535200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr16:70527000-70533400	Strong transcription	Brain Substantia Nigra	brain
45	chr16:70527000-70535200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr16:70527000-70535200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr16:70527000-70535400	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr16:70527000-70535800	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr16:70527200-70533000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr16:70527200-70535200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links