Variant report

Variant	rs8057766
Chromosome Location	chr16:70604927-70604928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70604065..70607054-chr16:70608889..70610552,2	K562	blood:
2	chr16:70604632..70605308-chr19:47747415..47748133,2	HCT-116	colon:
3	chr16:70601244..70603695-chr16:70604448..70607649,3	K562	blood:

Variant related genes	Relation type
ENSG00000260023	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11643373	0.96[YRI][hapmap]
rs11648402	0.88[LWK][hapmap];0.96[YRI][hapmap]
rs12102388	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12325225	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330945	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334712	0.87[AMR][1000 genomes]
rs13337689	1.00[AMR][1000 genomes]
rs13338169	1.00[EUR][1000 genomes]
rs13339302	1.00[MEX][hapmap]
rs16970240	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs16970253	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs16970260	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs17881316	0.88[LWK][hapmap];1.00[MEX][hapmap]
rs1979594	0.87[AMR][1000 genomes]
rs2168606	0.88[LWK][hapmap];1.00[YRI][hapmap]
rs2303793	0.93[YRI][hapmap]
rs28613466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3852695	0.92[YRI][hapmap]
rs56990872	1.00[EUR][1000 genomes]
rs57014028	0.86[AFR][1000 genomes]
rs57301833	0.87[AMR][1000 genomes]
rs60575688	1.00[AMR][1000 genomes]
rs6499320	1.00[YRI][hapmap]
rs6499327	0.85[YRI][hapmap]
rs7193228	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs7200891	0.87[AMR][1000 genomes]
rs7201750	0.83[LWK][hapmap];0.93[YRI][hapmap]
rs7202133	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573189	1.00[EUR][1000 genomes]
rs73575026	1.00[EUR][1000 genomes]
rs7919	0.83[LWK][hapmap];0.83[YRI][hapmap]
rs8045340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8057327	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs8057732	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs8058754	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs8062178	1.00[YRI][hapmap]
rs8063990	0.96[YRI][hapmap]
rs891138	0.86[YRI][hapmap];0.87[AMR][1000 genomes]
rs9921696	0.93[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs9924352	0.86[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs9925510	0.93[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes]
rs9928617	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs9929354	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs9934707	0.82[YRI][hapmap]
rs9940353	0.90[LWK][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70559400-70606200	Strong transcription	Fetal Stomach	stomach
2	chr16:70560400-70605200	Strong transcription	Fetal Muscle Trunk	muscle
3	chr16:70560400-70605600	Strong transcription	Placenta	Placenta
4	chr16:70560400-70607800	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr16:70560600-70609600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:70560800-70608800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr16:70561000-70605200	Strong transcription	Fetal Muscle Leg	muscle
8	chr16:70561000-70608800	Strong transcription	Fetal Thymus	thymus
9	chr16:70561000-70609000	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr16:70561000-70609400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr16:70561000-70610000	Strong transcription	Thymus	Thymus
12	chr16:70561200-70609400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr16:70561200-70609600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr16:70561400-70605200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr16:70561400-70607600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr16:70561400-70609000	Strong transcription	Primary B cells from cord blood	blood
17	chr16:70561400-70610000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:70561600-70609000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr16:70561600-70609200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr16:70561600-70609600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr16:70561600-70609800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
22	chr16:70562200-70609600	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr16:70562800-70608800	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr16:70562800-70609000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr16:70563000-70606400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr16:70563200-70605200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr16:70563200-70605800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr16:70563200-70606600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr16:70563200-70609000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr16:70563200-70609600	Strong transcription	Primary T cells from cord blood	blood
31	chr16:70563200-70609800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr16:70563200-70610000	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr16:70563400-70608400	Strong transcription	Fetal Brain Female	brain
34	chr16:70563400-70609000	Strong transcription	Brain Anterior Caudate	brain
35	chr16:70563400-70609800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr16:70563400-70610000	Strong transcription	A549	lung
37	chr16:70563600-70607400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr16:70563600-70608200	Strong transcription	HepG2	liver
39	chr16:70563600-70609600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr16:70563800-70606200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr16:70563800-70608600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr16:70563800-70610000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr16:70564000-70607800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr16:70564600-70608800	Strong transcription	Hela-S3	cervix
45	chr16:70566800-70608000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr16:70569400-70609000	Strong transcription	K562	blood
47	chr16:70570000-70609600	Strong transcription	Dnd41	blood
48	chr16:70570400-70608600	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr16:70570800-70606600	Strong transcription	Colonic Mucosa	Colon
50	chr16:70571000-70608200	Strong transcription	GM12878-XiMat	blood

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