Variant report

Variant	rs6083042
Chromosome Location	chr20:23193159-23193160
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23028981..23031490-chr20:23192901..23195286,2	MCF-7	breast:
2	chr20:23181724..23187567-chr20:23190860..23194115,6	MCF-7	breast:
3	chr20:23128655..23130225-chr20:23192779..23194718,2	K562	blood:
4	chr20:23184876..23187831-chr20:23190758..23193242,2	K562	blood:

Variant related genes	Relation type
ENSG00000178726	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1099456	0.94[ASN][1000 genomes]
rs11696272	0.86[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11896	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1338942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1338943	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1338944	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1416399	0.92[ASN][1000 genomes]
rs1538446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1572707	0.91[ASN][1000 genomes]
rs1856470	0.99[ASN][1000 genomes]
rs2024897	0.94[ASN][1000 genomes]
rs4813483	0.81[AMR][1000 genomes]
rs6036338	1.00[ASN][1000 genomes]
rs6048590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6048591	0.97[ASN][1000 genomes]
rs6048592	1.00[ASN][1000 genomes]
rs6048595	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6048612	0.97[ASN][1000 genomes]
rs6048615	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6048618	0.94[ASN][1000 genomes]
rs6048619	0.94[ASN][1000 genomes]
rs6076035	0.81[AMR][1000 genomes]
rs6076038	0.94[ASN][1000 genomes]
rs6076039	0.99[ASN][1000 genomes]
rs6076040	0.81[AMR][1000 genomes]
rs6076041	0.96[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6083030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6083031	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6083032	0.94[ASN][1000 genomes]
rs6083033	0.96[ASN][1000 genomes]
rs6083036	0.96[ASN][1000 genomes]
rs6083038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6083043	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6083044	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6083047	0.85[AMR][1000 genomes]
rs6106615	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6106617	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6106619	0.81[AMR][1000 genomes]
rs6114001	0.81[AMR][1000 genomes]
rs6114004	0.80[EUR][1000 genomes]
rs6132573	0.81[AMR][1000 genomes]
rs6132577	0.97[ASN][1000 genomes]
rs6132578	0.88[ASN][1000 genomes]
rs6132579	0.91[ASN][1000 genomes]
rs62206882	0.94[ASN][1000 genomes]
rs750652	0.94[ASN][1000 genomes]
rs750653	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs8118328	0.94[ASN][1000 genomes]
rs844924	0.92[ASN][1000 genomes]
rs844929	0.92[ASN][1000 genomes]
rs844930	0.94[ASN][1000 genomes]
rs844932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs844934	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs844936	0.94[ASN][1000 genomes]
rs844937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs844938	0.94[ASN][1000 genomes]
rs844939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs844940	0.94[ASN][1000 genomes]
rs844941	0.94[ASN][1000 genomes]
rs844942	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs867909	0.96[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs870225	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23188800-23193200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23191400-23193600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:23191600-23193600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr20:23192000-23193600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr20:23192200-23193400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:23192200-23193600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr20:23192200-23193600	Enhancers	Dnd41	blood
8	chr20:23192200-23193600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr20:23192600-23193200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:23192600-23193400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:23192600-23193400	Enhancers	Placenta	Placenta
12	chr20:23192600-23193600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr20:23192600-23193600	Enhancers	Fetal Muscle Leg	muscle
14	chr20:23192600-23193600	Enhancers	NHDF-Ad	bronchial
15	chr20:23192800-23193200	Enhancers	Stomach Mucosa	stomach
16	chr20:23192800-23193600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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