Variant report

Variant	rs6083602
Chromosome Location	chr20:24726912-24726913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24726357..24729522-chr20:24732233..24738144,6	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57844623	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061281	chr20:24711635-24815107	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv544217	chr20:24711635-24815107	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv912825	chr20:24715544-24813345	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24717400-24727600	Enhancers	Fetal Thymus	thymus
2	chr20:24723000-24729000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:24723600-24727000	Enhancers	Thymus	Thymus
4	chr20:24724600-24727000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr20:24724600-24727000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr20:24724600-24732600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr20:24724800-24727000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr20:24725200-24727800	Enhancers	Stomach Mucosa	stomach
9	chr20:24725400-24727000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr20:24725800-24727600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr20:24725800-24727600	Enhancers	Dnd41	blood
12	chr20:24726200-24727200	Enhancers	Esophagus	oesophagus
13	chr20:24726200-24728200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:24726400-24727200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr20:24726400-24727600	Weak transcription	Fetal Kidney	kidney
16	chr20:24726400-24727800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr20:24726600-24727000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr20:24726600-24727000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr20:24726600-24727200	Active TSS	Hela-S3	cervix
20	chr20:24726600-24727200	Bivalent Enhancer	HepG2	liver
21	chr20:24726600-24727400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr20:24726600-24727400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr20:24726600-24727400	Flanking Active TSS	A549	lung
24	chr20:24726600-24727400	Enhancers	NHEK	skin
25	chr20:24726600-24727600	Enhancers	Pancreas	Pancrea
26	chr20:24726600-24727600	Enhancers	HMEC	breast
27	chr20:24726600-24727800	Enhancers	Duodenum Mucosa	Duodenum
28	chr20:24726600-24727800	Enhancers	Spleen	Spleen
29	chr20:24726600-24728400	Enhancers	Gastric	stomach
30	chr20:24726800-24727000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr20:24726800-24727200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr20:24726800-24727400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr20:24726800-24727400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr20:24726800-24727400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr20:24726800-24727400	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr20:24726800-24728200	Enhancers	Placenta	Placenta

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