Variant report

Variant rs60842142
Chromosome Location chr19:41730985-41730986
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41724400-41733200 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
2 chr19:41725400-41731800 Weak transcription Primary hematopoietic stem cells blood
3 chr19:41726000-41733200 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
4 chr19:41726200-41731200 Weak transcription Fetal Kidney kidney
5 chr19:41726800-41731400 Enhancers HepG2 liver
6 chr19:41726800-41731600 Weak transcription Brain Germinal Matrix brain
7 chr19:41727200-41731400 Weak transcription Fetal Intestine Large intestine
8 chr19:41727800-41731200 Weak transcription Pancreas Pancrea
9 chr19:41727800-41731400 Weak transcription Placenta Placenta
10 chr19:41728200-41731400 Weak transcription Brain Anterior Caudate brain
11 chr19:41728400-41731200 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr19:41728400-41731400 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr19:41728400-41731400 Weak transcription Fetal Lung lung
14 chr19:41728400-41731600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr19:41728600-41731600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
16 chr19:41728600-41731600 Weak transcription Brain Substantia Nigra brain
17 chr19:41728800-41731400 Transcr. at gene 5' and 3' A549 lung
18 chr19:41729000-41731600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr19:41729200-41731400 Genic enhancers Fetal Stomach stomach
20 chr19:41729200-41731600 Transcr. at gene 5' and 3' HSMM muscle
21 chr19:41729200-41731800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
22 chr19:41729200-41731800 Transcr. at gene 5' and 3' Osteobl bone
23 chr19:41729200-41732000 Transcr. at gene 5' and 3' Muscle Satellite Cultured Cells --
24 chr19:41729200-41732800 Transcr. at gene 5' and 3' NHLF lung
25 chr19:41729400-41731600 Genic enhancers Fetal Muscle Leg muscle
26 chr19:41729400-41731600 Enhancers Left Ventricle heart
27 chr19:41729400-41731600 Enhancers K562 blood
28 chr19:41729600-41731800 Weak transcription Right Atrium heart
29 chr19:41729800-41731000 Bivalent Enhancer Skeletal Muscle Female skeletal muscle
30 chr19:41729800-41731200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr19:41729800-41731200 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr19:41729800-41731200 Enhancers Hela-S3 cervix
33 chr19:41729800-41731400 Transcr. at gene 5' and 3' Breast Myoepithelial Primary Cells Breast
34 chr19:41729800-41731400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr19:41729800-41731400 Weak transcription Brain Inferior Temporal Lobe brain
36 chr19:41729800-41731400 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr19:41729800-41731800 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr19:41729800-41731800 Weak transcription Colonic Mucosa Colon
39 chr19:41729800-41731800 Weak transcription Esophagus oesophagus
40 chr19:41729800-41731800 Weak transcription Ovary ovary
41 chr19:41729800-41732000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr19:41729800-41732000 Weak transcription Aorta Aorta
43 chr19:41730000-41731200 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr19:41730000-41731200 Genic enhancers HMEC breast
45 chr19:41730000-41731600 Weak transcription Brain Hippocampus Middle brain
46 chr19:41730000-41731600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr19:41730000-41731600 Weak transcription Fetal Intestine Small intestine
48 chr19:41730000-41732000 Weak transcription Lung lung
49 chr19:41730200-41731000 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr19:41730200-41731200 Enhancers ES-I3 Cell Line embryonic stem cell

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