Variant report

Variant	rs73931457
Chromosome Location	chr19:41736816-41736817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41734780..41738564-chr19:41748060..41751187,3	K562	blood:
2	chr19:41736676..41739290-chr19:41770146..41772060,2	MCF-7	breast:
3	chr19:41731216..41733195-chr19:41734702..41737336,2	MCF-7	breast:
4	chr19:41735933..41738836-chr19:41743059..41745644,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167601	Chromatin interaction
ENSG00000105323	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56343616	0.95[AFR][1000 genomes]
rs60842142	0.90[AFR][1000 genomes]
rs73931455	0.90[AFR][1000 genomes]
rs73931461	0.95[AFR][1000 genomes]
rs8110936	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911768	chr19:41680424-41748753	Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3452160	chr19:41734412-41737910	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3353863	chr19:41734412-41738010	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41730200-41762600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:41732600-41768800	Weak transcription	Small Intestine	intestine
3	chr19:41732800-41739200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:41732800-41742800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr19:41732800-41745200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:41733000-41738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:41733000-41739200	Weak transcription	Placenta	Placenta
8	chr19:41733000-41739400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:41733000-41739400	Weak transcription	Ovary	ovary
10	chr19:41733000-41740200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr19:41733000-41743000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:41733000-41743200	Weak transcription	Right Ventricle	heart
13	chr19:41733000-41743600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr19:41733000-41743600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr19:41733000-41743600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr19:41733000-41743600	Weak transcription	Esophagus	oesophagus
17	chr19:41733000-41743600	Weak transcription	Spleen	Spleen
18	chr19:41733000-41743800	Weak transcription	Colonic Mucosa	Colon
19	chr19:41733000-41744200	Weak transcription	Gastric	stomach
20	chr19:41733000-41745200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr19:41733200-41738000	Weak transcription	Colon Smooth Muscle	Colon
22	chr19:41733200-41738800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr19:41733200-41739400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr19:41733200-41739400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr19:41733200-41739600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr19:41733200-41740600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr19:41733200-41741400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr19:41733200-41745400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr19:41733200-41746000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:41733200-41749400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr19:41733200-41767200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr19:41733200-41767200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr19:41733400-41737200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr19:41733600-41739000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr19:41733800-41739400	Weak transcription	Fetal Intestine Small	intestine
36	chr19:41733800-41744800	Weak transcription	Fetal Intestine Large	intestine
37	chr19:41734000-41748600	Weak transcription	Hela-S3	cervix
38	chr19:41734200-41739400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr19:41734200-41740200	Weak transcription	HSMMtube	muscle
40	chr19:41734600-41739800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr19:41734800-41737200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr19:41734800-41738000	Weak transcription	HUVEC	blood vessel
43	chr19:41735200-41737000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr19:41735400-41741600	Strong transcription	NHEK	skin
45	chr19:41735600-41737000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr19:41735600-41737400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr19:41735600-41738200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr19:41736000-41739000	Strong transcription	NHDF-Ad	bronchial
49	chr19:41736000-41752400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr19:41736000-41767200	Strong transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links