Variant report

Variant	rs60843796
Chromosome Location	chr1:174041582-174041583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55773127	0.87[AFR][1000 genomes]
rs56106938	0.81[AFR][1000 genomes]
rs56204297	0.87[AFR][1000 genomes]
rs56223691	0.87[AFR][1000 genomes]
rs56713956	0.81[AFR][1000 genomes]
rs57774157	0.81[AFR][1000 genomes]
rs60717080	0.81[AFR][1000 genomes]
rs61077309	0.87[AFR][1000 genomes]
rs61288130	0.87[AFR][1000 genomes]
rs74128305	1.00[AFR][1000 genomes]
rs74128306	1.00[AFR][1000 genomes]
rs74128317	0.81[AFR][1000 genomes]
rs74128318	0.81[AFR][1000 genomes]
rs74128319	0.81[AFR][1000 genomes]
rs74128320	0.87[AFR][1000 genomes]
rs74128321	0.87[AFR][1000 genomes]
rs74128322	0.81[AFR][1000 genomes]
rs74128323	0.81[AFR][1000 genomes]
rs74128324	0.81[AFR][1000 genomes]
rs74128326	0.81[AFR][1000 genomes]
rs74128329	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916960	chr1:173907804-174080248	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174037600-174044200	Weak transcription	K562	blood
2	chr1:174040600-174041800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:174041200-174042400	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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