Variant report

Variant	rs56204297
Chromosome Location	chr1:174078489-174078490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:174072711..174074560-chr1:174076673..174078719,2	K562	blood:
2	chr1:173835673..173838237-chr1:174076539..174080354,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185278	Chromatin interaction
ENSG00000234741	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs55687343	0.87[AFR][1000 genomes]
rs55773127	1.00[AFR][1000 genomes]
rs56106938	0.93[AFR][1000 genomes]
rs56179605	0.87[AFR][1000 genomes]
rs56223691	1.00[AFR][1000 genomes]
rs56713956	0.93[AFR][1000 genomes]
rs57774157	0.93[AFR][1000 genomes]
rs58997380	0.87[AFR][1000 genomes]
rs59753012	0.87[AFR][1000 genomes]
rs60717080	0.93[AFR][1000 genomes]
rs60843796	0.87[AFR][1000 genomes]
rs61077309	1.00[AFR][1000 genomes]
rs61288130	1.00[AFR][1000 genomes]
rs74128305	0.87[AFR][1000 genomes]
rs74128306	0.87[AFR][1000 genomes]
rs74128315	0.85[AFR][1000 genomes]
rs74128317	0.93[AFR][1000 genomes]
rs74128318	0.93[AFR][1000 genomes]
rs74128319	0.93[AFR][1000 genomes]
rs74128320	1.00[AFR][1000 genomes]
rs74128321	1.00[AFR][1000 genomes]
rs74128322	0.93[AFR][1000 genomes]
rs74128323	0.93[AFR][1000 genomes]
rs74128324	0.93[AFR][1000 genomes]
rs74128326	0.93[AFR][1000 genomes]
rs74128329	0.93[AFR][1000 genomes]
rs74128334	0.87[AFR][1000 genomes]
rs74128342	0.87[AFR][1000 genomes]
rs74128343	0.87[AFR][1000 genomes]
rs74128344	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916960	chr1:173907804-174080248	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv831937	chr1:173949373-174131463	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv465661	chr1:174014507-174152688	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv548193	chr1:174014507-174152688	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174078200-174079600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links