The 2.0 version of rSNPBase

Variant report

Variant rs58997380
Chromosome Location chr1:174287570-174287571
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:174270800-174289800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr1:174273200-174288800 Weak transcription Small Intestine intestine
3 chr1:174275600-174287600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr1:174276200-174289400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr1:174283800-174287600 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
6 chr1:174284600-174294600 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:174284800-174288600 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr1:174284800-174289000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:174284800-174294400 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:174285000-174288600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr1:174285200-174288400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr1:174285200-174290200 Weak transcription Primary T cells fromperipheralblood blood
13 chr1:174285200-174294800 Weak transcription Right Ventricle heart
14 chr1:174285200-174295200 Weak transcription Brain Hippocampus Middle brain
15 chr1:174285400-174289400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:174285800-174288400 Strong transcription Primary T helper cells fromperipheralblood blood
17 chr1:174285800-174290000 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:174286000-174289400 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:174286000-174289600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr1:174286000-174296400 Weak transcription Brain Angular Gyrus brain
21 chr1:174286200-174288600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:174286200-174288800 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr1:174286400-174287600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
24 chr1:174286600-174288600 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:174287000-174288600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr1:174287000-174288800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
27 chr1:174287000-174289000 Weak transcription Duodenum Mucosa Duodenum
28 chr1:174287000-174289400 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:174287000-174289400 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr1:174287000-174289800 Weak transcription Aorta Aorta
31 chr1:174287000-174289800 Weak transcription Spleen Spleen
32 chr1:174287000-174290400 Weak transcription Pancreas Pancrea
33 chr1:174287000-174293800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr1:174287000-174296600 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr1:174287200-174287800 Weak transcription Esophagus oesophagus
36 chr1:174287200-174288600 Weak transcription Primary B cells from cord blood blood
37 chr1:174287200-174288800 Weak transcription Stomach Smooth Muscle stomach
38 chr1:174287200-174289000 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr1:174287200-174289000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr1:174287200-174289400 Weak transcription Fetal Intestine Small intestine
41 chr1:174287200-174289600 Weak transcription Left Ventricle heart
42 chr1:174287200-174290000 Weak transcription Liver Liver
43 chr1:174287200-174290000 Weak transcription Lung lung
44 chr1:174287200-174294600 Weak transcription Ovary ovary
45 chr1:174287200-174294800 Weak transcription Gastric stomach
46 chr1:174287400-174288600 Weak transcription Primary hematopoietic stem cells blood
47 chr1:174287400-174290000 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015