Variant report

Variant	rs60851395
Chromosome Location	chr14:55343107-55343108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483639	0.82[EUR][1000 genomes]
rs12587434	0.84[EUR][1000 genomes]
rs12589758	0.84[EUR][1000 genomes]
rs17128004	0.82[EUR][1000 genomes]
rs2057368	0.80[EUR][1000 genomes]
rs2057369	0.81[EUR][1000 genomes]
rs2878168	0.82[EUR][1000 genomes]
rs2878170	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4411417	0.82[EUR][1000 genomes]
rs55881030	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57875940	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58992937	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59750960	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148266	0.81[EUR][1000 genomes]
rs7154323	0.81[EUR][1000 genomes]
rs72713460	0.81[ASN][1000 genomes]
rs72713467	0.82[EUR][1000 genomes]
rs752688	0.82[EUR][1000 genomes]
rs841	0.81[EUR][1000 genomes]
rs9671455	0.84[EUR][1000 genomes]
rs9671850	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55329400-55347800	Weak transcription	Primary B cells from cord blood	blood
2	chr14:55330800-55347800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:55331800-55344800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr14:55331800-55347600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr14:55333200-55343800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:55334000-55346200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr14:55337000-55343600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr14:55337200-55345000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:55337400-55346000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr14:55337400-55346200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:55337400-55347800	Weak transcription	HSMMtube	muscle
12	chr14:55337600-55346400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:55337600-55348600	Weak transcription	Hela-S3	cervix
14	chr14:55337800-55345600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:55338000-55343200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:55338000-55346000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:55338200-55344000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:55338400-55344600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr14:55341000-55345800	Weak transcription	Liver	Liver
20	chr14:55341800-55343400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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