Variant report

Variant	rs841
Chromosome Location	chr14:55310492-55310493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55310463..55313127-chr14:55320351..55323154,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10131232	0.95[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10133662	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs10133941	0.86[ASN][1000 genomes]
rs10483639	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11626298	0.85[ASN][1000 genomes]
rs11848732	0.86[ASN][1000 genomes]
rs12587434	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12589758	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17127992	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17128004	0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2057368	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057369	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2145945	0.85[ASN][1000 genomes]
rs2149483	0.91[ASN][1000 genomes]
rs2878168	0.90[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4411417	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4462519	0.84[ASN][1000 genomes]
rs55985131	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57875940	0.98[EUR][1000 genomes]
rs58992937	0.84[EUR][1000 genomes]
rs59750960	0.83[EUR][1000 genomes]
rs60851395	0.81[EUR][1000 genomes]
rs67468157	0.89[ASN][1000 genomes]
rs7141685	0.84[ASN][1000 genomes]
rs7144602	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs7147737	0.81[ASN][1000 genomes]
rs7148266	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7151058	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154323	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7155309	0.92[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72713453	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72713456	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72713460	0.92[EUR][1000 genomes]
rs72713467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs752688	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007201	0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs9323272	0.84[ASN][1000 genomes]
rs9671371	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs9671455	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9671850	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55303400-55337000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:55305000-55320400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr14:55305200-55312200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr14:55305200-55337200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:55305400-55314000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:55305400-55325800	Weak transcription	Spleen	Spleen
7	chr14:55305600-55313200	Strong transcription	Primary T cells from cord blood	blood
8	chr14:55305800-55313000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:55305800-55313200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:55305800-55313600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr14:55305800-55321000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:55305800-55326400	Weak transcription	Fetal Thymus	thymus
13	chr14:55306000-55314200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr14:55306200-55320800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr14:55306200-55337000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:55306400-55311200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr14:55306400-55311400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr14:55306400-55312800	Weak transcription	Gastric	stomach
19	chr14:55306400-55336800	Weak transcription	Dnd41	blood
20	chr14:55306600-55321000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:55306600-55336600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:55306800-55327400	Weak transcription	Pancreas	Pancrea
23	chr14:55306800-55337000	Weak transcription	Brain Anterior Caudate	brain
24	chr14:55307000-55312400	Weak transcription	Stomach Mucosa	stomach
25	chr14:55307000-55313400	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr14:55307200-55313000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr14:55308000-55336600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr14:55308200-55310800	Weak transcription	HepG2	liver
29	chr14:55308200-55313000	Weak transcription	Esophagus	oesophagus
30	chr14:55308200-55332400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:55308400-55320600	Weak transcription	Primary B cells from cord blood	blood
32	chr14:55308400-55330600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr14:55308600-55325600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:55308600-55325600	Weak transcription	Lung	lung
35	chr14:55308800-55311600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr14:55309400-55310800	Genic enhancers	Liver	Liver
37	chr14:55309600-55311400	Enhancers	Aorta	Aorta
38	chr14:55309600-55312400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:55309600-55313200	Enhancers	Fetal Intestine Small	intestine
40	chr14:55309800-55319000	Weak transcription	GM12878-XiMat	blood
41	chr14:55309800-55320800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:55309800-55320800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:55309800-55321000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr14:55309800-55325600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr14:55309800-55325800	Weak transcription	Thymus	Thymus
46	chr14:55310000-55310600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:55310000-55311200	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr14:55310000-55311800	Enhancers	Fetal Intestine Large	intestine
49	chr14:55310000-55312800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:55310200-55310800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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