Variant report

Variant	rs7141685
Chromosome Location	chr14:55290469-55290470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55289701..55291395-chr14:55367160..55368912,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10131232	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10133650	0.95[YRI][hapmap]
rs10133662	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10133941	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10483639	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs11158024	0.91[YRI][hapmap]
rs11626298	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11848732	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587434	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs12589758	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs17127992	0.88[ASN][1000 genomes]
rs17128004	0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2057368	0.85[ASN][1000 genomes]
rs2057369	0.85[ASN][1000 genomes]
rs2145945	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2149483	0.84[ASN][1000 genomes]
rs2183081	0.95[YRI][hapmap]
rs2878168	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2878172	0.83[YRI][hapmap]
rs3783642	0.87[YRI][hapmap]
rs4411417	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4462519	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55985131	0.88[ASN][1000 genomes]
rs67468157	0.82[ASN][1000 genomes]
rs7144602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7147286	0.88[YRI][hapmap]
rs7148266	0.86[ASN][1000 genomes]
rs7151058	0.92[ASN][1000 genomes]
rs7154323	0.89[ASN][1000 genomes]
rs7155309	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs72713453	0.88[ASN][1000 genomes]
rs72713456	0.88[ASN][1000 genomes]
rs72713467	0.81[ASN][1000 genomes]
rs752688	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs8007201	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8023187	0.83[YRI][hapmap]
rs841	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9323272	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671371	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9671455	0.96[CHB][hapmap];0.84[ASN][1000 genomes]
rs9671850	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55290200-55290800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links