Variant report

Variant	rs2145945
Chromosome Location	chr14:55304080-55304081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55303907..55306505-chr14:55308047..55309664,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10131232	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10133650	0.95[YRI][hapmap]
rs10133662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10133941	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10483639	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs11158024	0.91[YRI][hapmap]
rs11626298	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11848732	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587434	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs12589758	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs17127992	0.85[ASN][1000 genomes]
rs17128004	0.95[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2057368	0.88[ASN][1000 genomes]
rs2057369	0.88[ASN][1000 genomes]
rs2149483	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2183081	0.93[MKK][hapmap];0.95[YRI][hapmap]
rs2878168	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2878172	0.83[YRI][hapmap]
rs3783642	0.87[YRI][hapmap]
rs4411417	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4462519	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55985131	0.85[ASN][1000 genomes]
rs67468157	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7141685	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7144602	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7147286	0.87[YRI][hapmap]
rs7148266	0.87[ASN][1000 genomes]
rs7151058	0.88[ASN][1000 genomes]
rs7154323	0.92[ASN][1000 genomes]
rs7155309	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs72713453	0.84[ASN][1000 genomes]
rs72713456	0.85[ASN][1000 genomes]
rs72713467	0.81[ASN][1000 genomes]
rs752688	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs8007201	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8023187	0.82[YRI][hapmap]
rs841	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs9323272	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9671371	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9671455	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9671850	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2145945	WDHD1	cis	parietal	SCAN
rs2145945	FBXO34	cis	cerebellum	SCAN
rs2145945	ATG14	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55293800-55306400	Weak transcription	Aorta	Aorta
2	chr14:55299200-55308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:55300400-55305800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:55301000-55305600	Enhancers	Liver	Liver
5	chr14:55301000-55305800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:55301000-55310000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr14:55301800-55306000	Enhancers	HepG2	liver
8	chr14:55301800-55306400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr14:55303200-55306600	Enhancers	Fetal Intestine Small	intestine
10	chr14:55303400-55337000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:55304000-55305600	Weak transcription	Primary T cells from cord blood	blood
12	chr14:55304000-55305800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr14:55304000-55306800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links