Variant report

Variant	rs9323272
Chromosome Location	chr14:55288924-55288925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10131232	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10133662	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10133941	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10483639	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs11626298	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11848732	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12587434	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs12589758	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs17127992	0.88[ASN][1000 genomes]
rs17128004	0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2057368	0.85[ASN][1000 genomes]
rs2057369	0.85[ASN][1000 genomes]
rs2145945	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2149483	0.84[ASN][1000 genomes]
rs2183081	0.83[MKK][hapmap]
rs2878168	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs4411417	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs4462519	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55985131	0.88[ASN][1000 genomes]
rs67468157	0.82[ASN][1000 genomes]
rs7141685	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144602	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7148266	0.86[ASN][1000 genomes]
rs7151058	0.92[ASN][1000 genomes]
rs7154323	0.89[ASN][1000 genomes]
rs7155309	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs72713453	0.88[ASN][1000 genomes]
rs72713456	0.88[ASN][1000 genomes]
rs72713467	0.81[ASN][1000 genomes]
rs752688	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs8007201	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs841	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9671371	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9671455	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs9671850	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9323272	FBXO34	cis	cerebellum	SCAN
rs9323272	C2CD4B	trans	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55285400-55290000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55288800-55289000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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