Variant report

Variant	rs17127992
Chromosome Location	chr14:55296729-55296730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10131232	0.82[ASN][1000 genomes]
rs10133662	0.82[ASN][1000 genomes]
rs10133941	0.82[ASN][1000 genomes]
rs10483639	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11626298	0.81[ASN][1000 genomes]
rs11848732	0.82[ASN][1000 genomes]
rs12587434	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12589758	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17128004	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2057368	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2057369	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2145945	0.85[ASN][1000 genomes]
rs2149483	0.87[ASN][1000 genomes]
rs2878168	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4411417	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55985131	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57875940	0.93[EUR][1000 genomes]
rs67468157	0.85[ASN][1000 genomes]
rs7141685	0.88[ASN][1000 genomes]
rs7144602	0.88[ASN][1000 genomes]
rs7147737	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7148266	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7151058	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154323	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7155309	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72713453	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72713456	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713460	0.99[EUR][1000 genomes]
rs72713467	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs752688	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8007201	0.80[ASN][1000 genomes]
rs841	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9323272	0.88[ASN][1000 genomes]
rs9671371	0.87[ASN][1000 genomes]
rs9671455	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9671850	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55293800-55306400	Weak transcription	Aorta	Aorta
2	chr14:55296600-55296800	Bivalent Enhancer	NHDF-Ad	bronchial

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