Variant report

Variant	rs60865756
Chromosome Location	chr17:16298174-16298175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16286179..16290055-chr17:16297586..16300314,3	K562	blood:
2	chr17:16293348..16296665-chr17:16297807..16300818,3	K562	blood:
3	chr17:16288555..16291340-chr17:16297586..16299313,2	K562	blood:

Variant related genes	Relation type
ENSG00000265095	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28833845	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56884277	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8065945	0.82[ASN][1000 genomes]
rs9893057	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9893097	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9908067	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9908960	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1061463	chr17:16245878-16490691	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
7	nsv543216	chr17:16245878-16490691	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
8	nsv1065254	chr17:16252880-16389930	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
9	nsv428668	chr17:16265210-16455285	Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases
10	nsv978556	chr17:16268432-16302479	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16290000-16300000	Weak transcription	Spleen	Spleen
2	chr17:16290600-16301800	Weak transcription	Pancreas	Pancrea
3	chr17:16290600-16302200	Weak transcription	Stomach Mucosa	stomach
4	chr17:16290600-16308800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:16290800-16301800	Weak transcription	Thymus	Thymus
6	chr17:16290800-16307600	Weak transcription	Ovary	ovary
7	chr17:16291000-16299400	Weak transcription	Right Atrium	heart
8	chr17:16291200-16310200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr17:16291400-16299600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr17:16291600-16298800	Weak transcription	HepG2	liver
11	chr17:16291600-16299600	Weak transcription	A549	lung
12	chr17:16291600-16301400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr17:16291600-16301800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:16291600-16301800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr17:16291800-16300600	Weak transcription	Fetal Intestine Small	intestine
16	chr17:16295000-16301800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr17:16295200-16301800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr17:16295400-16299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:16295400-16310000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:16295600-16301800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:16296000-16299400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr17:16296400-16301800	Weak transcription	Placenta	Placenta

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