Variant report

Variant	rs608694
Chromosome Location	chr10:6568615-6568616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL2RA-6	chr10:6567126-6569172	NONHSAT011226

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1983910	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv549912	chr10:6566975-6629225	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6510000-6572000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:6553200-6571400	Weak transcription	Pancreas	Pancrea
3	chr10:6557400-6582400	Weak transcription	Dnd41	blood
4	chr10:6558800-6579400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:6561600-6570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:6562600-6572200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr10:6562800-6580000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:6563000-6579200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:6565200-6569200	Strong transcription	Fetal Thymus	thymus
10	chr10:6565400-6569000	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr10:6566000-6571600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:6566400-6569000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:6566600-6569200	Strong transcription	Thymus	Thymus
14	chr10:6567000-6569000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:6567200-6568800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:6567600-6568800	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:6567600-6569000	Strong transcription	Primary T cells from cord blood	blood
18	chr10:6567600-6569200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr10:6567800-6569000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr10:6568000-6569200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:6568000-6581200	Weak transcription	K562	blood
22	chr10:6568200-6568800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:6568200-6569000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:6568400-6568800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:6568400-6569400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr10:6568400-6571200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:6568400-6571600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr10:6568600-6569200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
29	chr10:6568600-6569200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:6568600-6569400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:6568600-6570200	Weak transcription	Esophagus	oesophagus

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