Variant report

Variant	rs60878920
Chromosome Location	chr21:44867704-44867705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCFL	chr21:44867582-44867708	K562	blood:	n/a	n/a
2	RAD21	chr21:44867568-44867721	K562	blood:	n/a	n/a
3	CTCF	chr21:44867600-44867750	GM12864	blood:	n/a	n/a
4	SMC3	chr21:44867495-44867761	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr21:44867620-44867770	GM12864	blood:	n/a	n/a
6	CTCF	chr21:44867580-44867730	GM12869	blood:	n/a	n/a
7	TCF12	chr21:44865829-44867904	ECC-1	luminal epithelium:	n/a	chr21:44865937-44865947
8	CTCF	chr21:44867560-44867710	HCFaa	heart:	n/a	n/a
9	CTCF	chr21:44867560-44867710	HCM	heart:	n/a	n/a
10	CTCF	chr21:44867423-44867746	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr21:44867560-44867710	AG04449	skin:	n/a	n/a
12	POLR2A	chr21:44864644-44867800	MCF10A-Er-Src	breast:	n/a	n/a
13	CTCF	chr21:44867620-44867770	HUVEC	blood vessel:	n/a	n/a
14	CTCF	chr21:44867658-44867724	GM13976	blood:	n/a	n/a
15	MAX	chr21:44865843-44867891	ECC-1	luminal epithelium:	n/a	chr21:44866341-44866352 chr21:44866340-44866353 chr21:44866091-44866101 chr21:44866897-44866905 chr21:44866159-44866168 chr21:44866414-44866423 chr21:44866413-44866424 chr21:44866337-44866356 chr21:44866342-44866351
16	CTCF	chr21:44867620-44867770	BE2_C	brain:	n/a	n/a
17	CTCF	chr21:44867620-44867770	GM12873	blood:	n/a	n/a
18	CTCF	chr21:44867580-44867730	HBMEC	blood vessel:	n/a	n/a
19	SMC3	chr21:44867539-44867840	K562	blood:	n/a	n/a
20	CTCF	chr21:44867559-44867743	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr21:44867580-44867730	GM12875	blood:	n/a	n/a
22	CTCF	chr21:44867592-44867726	GM13977	blood:	n/a	n/a
23	STAT3	chr21:44867344-44867719	MCF10A-Er-Src	breast:	n/a	chr21:44867429-44867440
24	CTCF	chr21:44867560-44867710	GM12878	blood:	n/a	n/a
25	CTCF	chr21:44867560-44867710	GM12865	blood:	n/a	n/a
26	CTCF	chr21:44867600-44867750	SAEC	small airway:	n/a	n/a
27	CTCF	chr21:44867580-44867730	K562	blood:	n/a	n/a
28	ZBTB7A	chr21:44867560-44867738	K562	blood:	n/a	n/a
29	CBX3	chr21:44867456-44867874	K562	blood:	n/a	n/a
30	ZNF143	chr21:44867570-44867731	K562	blood:	n/a	n/a
31	UBTF	chr21:44867549-44867789	K562	blood:	n/a	n/a
32	MAX	chr21:44867557-44867806	K562	blood:	n/a	n/a
33	CTCF	chr21:44867580-44867730	HEK293	kidney:	n/a	n/a
34	CTCF	chr21:44867505-44867818	GM12878	blood:	n/a	n/a
35	CTCF	chr21:44867640-44867790	HVMF	connective:	n/a	n/a
36	CTCF	chr21:44867476-44867762	K562	blood:	n/a	n/a
37	CTCF	chr21:44867600-44867750	GM12868	blood:	n/a	n/a
38	MAX	chr21:44865757-44867901	ECC-1	luminal epithelium:	n/a	chr21:44866341-44866352 chr21:44866340-44866353 chr21:44866091-44866101 chr21:44866897-44866905 chr21:44866159-44866168 chr21:44866414-44866423 chr21:44866413-44866424 chr21:44866337-44866356 chr21:44866342-44866351
39	CTCF	chr21:44867580-44867730	A549	lung:	n/a	n/a
40	EP300	chr21:44867115-44867746	ECC-1	luminal epithelium:	n/a	chr21:44867468-44867484 chr21:44867330-44867346
41	RAD21	chr21:44867486-44867811	SK-N-SH_RA	brain:	n/a	n/a
42	CTCF	chr21:44867565-44867767	K562	blood:	n/a	n/a
43	CTCF	chr21:44867516-44867799	K562	blood:	n/a	n/a
44	POLR2A	chr21:44864435-44867776	Hela-S3	cervix:	n/a	n/a
45	CTCF	chr21:44867560-44867710	Hela-S3	cervix:	n/a	n/a
46	EP300	chr21:44867017-44867947	ECC-1	luminal epithelium:	n/a	chr21:44867468-44867484 chr21:44867330-44867346
47	RCOR1	chr21:44867673-44867733	K562	blood:	n/a	n/a
48	CTCF	chr21:44867580-44867730	SK-N-SH_RA	brain:	n/a	n/a
49	CTCF	chr21:44867560-44867710	GM12872	blood:	n/a	n/a
50	MAZ	chr21:44867616-44867762	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:44757949..44760610-chr21:44866735..44869231,2	MCF-7	breast:
2	chr21:44867360..44868094-chr21:45065218..45066020,3	MCF-7	breast:
3	chr21:44843469..44848793-chr21:44863960..44868998,7	MCF-7	breast:
4	chr21:44866839..44869557-chr21:44874645..44877226,3	MCF-7	breast:
5	chr21:44597050..44598895-chr21:44866871..44869287,2	MCF-7	breast:
6	chr21:44867624..44869874-chr21:44871869..44874699,2	K562	blood:
7	chr21:44866923..44869837-chr21:44897348..44898850,2	MCF-7	breast:
8	chr21:44866574..44868384-chr21:44921844..44924261,3	MCF-7	breast:
9	chr21:44866366..44868087-chr21:44868239..44871091,2	MCF-7	breast:
10	chr21:44863698..44865894-chr21:44867364..44869009,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RRP1B-3	chr21:44864600-44870801	NONHSAT082407

Variant related genes	Relation type
LINC00319	TF binding region
ENSG00000188660	Chromatin interaction
ENSG00000142178	Chromatin interaction
ENSG00000185186	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11088981	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626351	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626369	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626667	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626693	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626954	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626999	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12627012	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004551	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17004552	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17004553	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17004554	0.94[ASN][1000 genomes]
rs17004555	0.94[ASN][1000 genomes]
rs1865757	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1865758	1.00[ASN][1000 genomes]
rs2838305	0.94[ASN][1000 genomes]
rs364326	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs476861	0.80[ASN][1000 genomes]
rs529770	0.80[ASN][1000 genomes]
rs56015857	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56176112	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56243743	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58427549	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587087	0.80[ASN][1000 genomes]
rs58867020	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59776855	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61001215	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6518212	0.92[ASN][1000 genomes]
rs7279895	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7281089	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7281094	0.92[ASN][1000 genomes]
rs7281188	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7282498	0.98[ASN][1000 genomes]
rs73223039	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223040	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223041	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73223042	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223043	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223044	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223046	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8131995	0.92[ASN][1000 genomes]
rs9647237	0.92[ASN][1000 genomes]
rs9680399	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9982011	0.86[ASN][1000 genomes]
rs9982824	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056684	chr21:44539714-44886119	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv913831	chr21:44563995-44931821	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
3	nsv1057726	chr21:44711850-44957303	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
4	nsv544466	chr21:44711850-44957303	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	nsv913838	chr21:44740134-44931821	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
6	nsv913839	chr21:44750200-44931821	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
7	nsv913844	chr21:44779680-44875495	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv913845	chr21:44781356-44874702	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv470901	chr21:44781356-44884252	Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
10	nsv913847	chr21:44792003-44931821	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
11	nsv913849	chr21:44817248-44925334	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
12	nsv516339	chr21:44823479-44873060	Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
13	nsv913852	chr21:44829087-44925334	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
14	nsv913853	chr21:44831981-44873017	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
15	nsv913854	chr21:44831981-44873060	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
16	nsv913855	chr21:44831981-44873795	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
17	nsv913856	chr21:44831981-44874702	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
18	nsv913857	chr21:44831981-44875495	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
19	nsv913858	chr21:44831981-44877881	Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
20	nsv913859	chr21:44831981-44884252	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
21	nsv913860	chr21:44831981-44925334	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
22	nsv913862	chr21:44833854-44877881	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
23	nsv459288	chr21:44835508-44870150	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
24	nsv587685	chr21:44835508-44870150	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
25	nsv913865	chr21:44835508-44873017	Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
26	nsv913866	chr21:44835508-44874702	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
27	nsv913867	chr21:44835508-44925334	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
28	nsv913868	chr21:44835508-44954522	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
29	nsv913869	chr21:44837555-44871063	Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
30	nsv828901	chr21:44838108-44873453	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
31	nsv587686	chr21:44848070-44871189	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
32	nsv913870	chr21:44848070-44875495	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
33	nsv913871	chr21:44858534-44874702	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
34	nsv587687	chr21:44860542-44874702	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
35	nsv913872	chr21:44860542-44925334	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
36	nsv587688	chr21:44864079-44874702	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
37	esv1839560	chr21:44864079-44973184	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:44856800-44873200	Enhancers	Placenta	Placenta
2	chr21:44858800-44867800	Enhancers	Fetal Intestine Small	intestine
3	chr21:44859400-44883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr21:44861800-44869200	Weak transcription	Fetal Brain Female	brain
5	chr21:44862000-44870400	Enhancers	A549	lung
6	chr21:44862600-44868200	Enhancers	Spleen	Spleen
7	chr21:44863400-44877200	Weak transcription	Right Atrium	heart
8	chr21:44864200-44868800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr21:44864400-44868800	Enhancers	Lung	lung
10	chr21:44864800-44868400	Bivalent Enhancer	Adipose Nuclei	Adipose
11	chr21:44864800-44870000	Weak transcription	HSMM	muscle
12	chr21:44865000-44869600	Weak transcription	HSMMtube	muscle
13	chr21:44865000-44869800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr21:44865000-44873800	Weak transcription	GM12878-XiMat	blood
15	chr21:44865200-44869600	Weak transcription	Fetal Lung	lung
16	chr21:44866000-44868400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr21:44866000-44868400	Weak transcription	HepG2	liver
18	chr21:44866200-44868000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr21:44866200-44873400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr21:44866600-44867800	Enhancers	Esophagus	oesophagus
21	chr21:44866600-44867800	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr21:44866600-44872200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr21:44866800-44867800	Enhancers	Right Ventricle	heart
24	chr21:44866800-44867800	Enhancers	HMEC	breast
25	chr21:44866800-44868000	Bivalent Enhancer	Fetal Thymus	thymus
26	chr21:44866800-44868200	Enhancers	HUVEC	blood vessel
27	chr21:44866800-44868800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr21:44866800-44869000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr21:44866800-44869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr21:44867000-44867800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr21:44867000-44867800	Enhancers	Fetal Brain Male	brain
32	chr21:44867000-44870000	Weak transcription	NHEK	skin
33	chr21:44867000-44870800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr21:44867000-44881000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr21:44867200-44868000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr21:44867200-44868200	Enhancers	Pancreas	Pancrea
37	chr21:44867400-44868200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
38	chr21:44867600-44867800	Flanking Active TSS	Liver	Liver
39	chr21:44867600-44868400	Enhancers	Left Ventricle	heart
40	chr21:44867600-44868400	Enhancers	Thymus	Thymus
41	chr21:44867600-44868800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr21:44867600-44869000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr21:44867600-44869600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr21:44867600-44870800	Enhancers	Hela-S3	cervix

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