Variant report
| Variant | rs60895554 |
|---|---|
| Chromosome Location | chr4:106446232-106446233 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:106445140..106446660-chr4:106447275..106449907,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000216425 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11097893 | 0.94[ASN][1000 genomes] |
| rs11946577 | 0.91[ASN][1000 genomes] |
| rs12505821 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17035656 | 0.91[ASN][1000 genomes] |
| rs17430855 | 0.94[ASN][1000 genomes] |
| rs17508919 | 0.94[ASN][1000 genomes] |
| rs17617731 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2023839 | 0.94[ASN][1000 genomes] |
| rs36024005 | 0.93[ASN][1000 genomes] |
| rs3756258 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3796915 | 0.94[ASN][1000 genomes] |
| rs3864227 | 0.91[ASN][1000 genomes] |
| rs55803474 | 0.94[ASN][1000 genomes] |
| rs57424681 | 0.94[ASN][1000 genomes] |
| rs6830281 | 0.91[ASN][1000 genomes] |
| rs6831259 | 0.88[ASN][1000 genomes] |
| rs72953753 | 0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72957598 | 0.94[ASN][1000 genomes] |
| rs72959641 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879699 | chr4:106212562-106698892 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv521423 | chr4:106442518-106448900 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
