Variant report

Variant	rs72959641
Chromosome Location	chr4:106480737-106480738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11097893	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946577	0.85[ASN][1000 genomes]
rs12505821	1.00[ASN][1000 genomes]
rs17035656	0.85[ASN][1000 genomes]
rs17430855	1.00[ASN][1000 genomes]
rs17508919	1.00[ASN][1000 genomes]
rs17617731	1.00[ASN][1000 genomes]
rs2023839	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36024005	0.99[ASN][1000 genomes]
rs3756258	1.00[ASN][1000 genomes]
rs3796915	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3864227	0.85[ASN][1000 genomes]
rs55803474	1.00[ASN][1000 genomes]
rs57424681	1.00[ASN][1000 genomes]
rs60895554	0.94[ASN][1000 genomes]
rs6830281	0.85[ASN][1000 genomes]
rs6831259	0.83[ASN][1000 genomes]
rs72953753	0.98[ASN][1000 genomes]
rs72957598	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1005011	chr4:106461690-106496019	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1013019	chr4:106461690-106501412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv524424	chr4:106466128-106491511	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv461610	chr4:106466128-106491511	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv595008	chr4:106466128-106491511	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv517837	chr4:106466588-106502513	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106478000-106483000	Enhancers	Fetal Intestine Large	intestine
2	chr4:106479400-106481400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:106479600-106481400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:106480000-106481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:106480400-106480800	Genic enhancers	Fetal Intestine Small	intestine
6	chr4:106480400-106480800	Enhancers	Pancreas	Pancrea
7	chr4:106480400-106481200	Enhancers	Small Intestine	intestine
8	chr4:106480600-106481200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:106480600-106481600	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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